Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2828313..2828869 Replicon chromosome
Accession NZ_CP009007
Organism Xanthomonas citri pv. citri strain MF20

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag AMD10_RS12800 Protein ID WP_011051576.1
Coordinates 2828313..2828603 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID M4UBZ0
Locus tag AMD10_RS12805 Protein ID WP_004541313.1
Coordinates 2828591..2828869 (-) Length 93 a.a.

Genomic Context

AMD10_RS12820AMD10_RS12825AMD10_RS25260AMD10_RS12775AMD10_RS12780AMD10_RS12790AMD10_RS12795AMD10_RS12800AMD10_RS12805AMD10_RS12810
Location: 2830356..2831581 (1226 bp)
Type: Others
Protein ID: Protein_2419
Location: 2832199..2833155 (957 bp)
Type: Others
Protein ID: WP_197707729.1
Location: 2824050..2825006 (957 bp)
Type: Others
Protein ID: WP_011051571.1
Location: 2825073..2826206 (1134 bp)
Type: Others
Protein ID: Protein_2412
Location: 2826246..2827333 (1088 bp)
Type: Others
Protein ID: Protein_2413
Location: 2827546..2827725 (180 bp)
Type: Others
Protein ID: WP_015463309.1
Location: 2827996..2828310 (315 bp)
Type: Others
Protein ID: WP_015463310.1
Location: 2828313..2828603 (291 bp)
Type: Toxin
Protein ID: WP_011051576.1
Location: 2828591..2828869 (279 bp)
Type: Antitoxin
Protein ID: WP_004541313.1
Location: 2829039..2830307 (1269 bp)
Type: Others
Protein ID: Protein_2418
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AMD10_RS252602824050..2825006-957WP_011051571.1hypothetical protein-
AMD10_RS127752825073..2826206-1134Protein_2412IS5 family transposase-
AMD10_RS127802826246..2827333-1088Protein_2413IS3 family transposase-
AMD10_RS127902827546..2827725-180WP_015463309.1hypothetical protein-
AMD10_RS127952827996..2828310-315WP_015463310.1hypothetical protein-
AMD10_RS128002828313..2828603-291WP_011051576.1type II toxin-antitoxin system RelE/ParE family toxinToxin
AMD10_RS128052828591..2828869-279WP_004541313.1CopG family ribbon-helix-helix proteinAntitoxin
AMD10_RS128102829039..2830307-1269Protein_2418transposase-
AMD10_RS128202830356..2831581+1226Protein_2419IS3 family transposase-
AMD10_RS128252832199..2833155+957WP_197707729.1recombinase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
insideGenomic island--2820483..284700326520
insideIScluster/Tn--2825073..28315816508


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10831.41 Da        Isoelectric Point: 9.9308

>T48058 WP_011051576.1 NZ_CP009007:c2828603-2828313 [Xanthomonas citri pv. citri]
MPQVIFAPAAIGDMQRLREFLKPKSPDAARRAGEAIRRGVQALGAHPRMGRLIEDLPEQYREWLIDFGDSGYVARYRHAG
DTVTILAVRHQKEAGY

Download         Length: 291 bp

>T48058 NZ_CP009007:c2828603-2828313 [Xanthomonas citri pv. citri]
ATGCCACAAGTAATCTTTGCGCCGGCGGCGATCGGGGACATGCAACGGCTGCGCGAATTCCTGAAGCCGAAGAGTCCCGA
TGCCGCGAGGCGGGCCGGTGAAGCGATTAGGCGCGGCGTCCAGGCTCTCGGTGCCCACCCTCGAATGGGGCGGCTCATAG
AAGATCTGCCTGAACAGTATCGGGAGTGGCTTATCGATTTTGGGGATAGTGGCTATGTGGCTCGGTACCGCCACGCTGGC
GATACCGTCACGATTTTGGCCGTGCGACACCAGAAGGAAGCGGGGTACTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10810.11 Da        Isoelectric Point: 4.9736

>AT48058 WP_004541313.1 NZ_CP009007:c2828869-2828591 [Xanthomonas citri pv. citri]
MVTATSIKLDDELKGRVQHLAEARRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK

Download         Length: 279 bp

>AT48058 NZ_CP009007:c2828869-2828591 [Xanthomonas citri pv. citri]
ATGGTTACGGCAACTTCCATCAAGCTTGATGATGAATTGAAAGGGCGGGTTCAGCACTTGGCCGAGGCGCGCCGGCGTAC
CCCGCATTGGATCATGCGCGAAGCCATTGAGCAGTACGTCGAGCGCGAGGAAAAGCGTGAGGCGTTGAACCGGGACACGC
TCAAGGCATGGGATGAATTTCAGGCGACGGGCCTGCACGTGACCGCTGAGGAAGTGGACAAGTGGCTCGCGAGCTGGGGA
ACAGACGACGAACTGCCTCCGCCAGAATGCCACAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBM4UBZ0

References