Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2828314..2828870 Replicon chromosome
Accession NZ_CP006857
Organism Xanthomonas citri subsp. citri A306

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag J151_RS12850 Protein ID WP_011051576.1
Coordinates 2828314..2828604 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID M4UBZ0
Locus tag J151_RS12855 Protein ID WP_004541313.1
Coordinates 2828592..2828870 (-) Length 93 a.a.

Genomic Context

J151_RS12870J151_RS12875J151_RS25390J151_RS12825J151_RS12830J151_RS12840J151_RS12845J151_RS12850J151_RS12855J151_RS12860
Location: 2830357..2831582 (1226 bp)
Type: Others
Protein ID: Protein_2418
Location: 2832218..2833156 (939 bp)
Type: Others
Protein ID: WP_043930788.1
Location: 2824051..2825007 (957 bp)
Type: Others
Protein ID: WP_011051571.1
Location: 2825074..2826207 (1134 bp)
Type: Others
Protein ID: Protein_2411
Location: 2826247..2827334 (1088 bp)
Type: Others
Protein ID: Protein_2412
Location: 2827547..2827726 (180 bp)
Type: Others
Protein ID: WP_015463309.1
Location: 2827997..2828317 (321 bp)
Type: Others
Protein ID: WP_099522003.1
Location: 2828314..2828604 (291 bp)
Type: Toxin
Protein ID: WP_011051576.1
Location: 2828592..2828870 (279 bp)
Type: Antitoxin
Protein ID: WP_004541313.1
Location: 2829040..2830308 (1269 bp)
Type: Others
Protein ID: Protein_2417
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
J151_RS253902824051..2825007-957WP_011051571.1hypothetical protein-
J151_RS128252825074..2826207-1134Protein_2411IS5 family transposase-
J151_RS128302826247..2827334-1088Protein_2412IS3 family transposase-
J151_RS128402827547..2827726-180WP_015463309.1hypothetical protein-
J151_RS128452827997..2828317-321WP_099522003.1hypothetical protein-
J151_RS128502828314..2828604-291WP_011051576.1type II toxin-antitoxin system RelE/ParE family toxinToxin
J151_RS128552828592..2828870-279WP_004541313.1CopG family ribbon-helix-helix proteinAntitoxin
J151_RS128602829040..2830308-1269Protein_2417transposase-
J151_RS128702830357..2831582+1226Protein_2418IS3 family transposase-
J151_RS128752832218..2833156+939WP_043930788.1recombinase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
insideGenomic island--2820484..284700426520
insideIScluster/Tn--2825074..28315826508


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10831.41 Da        Isoelectric Point: 9.9308

>T45715 WP_011051576.1 NZ_CP006857:c2828604-2828314 [Xanthomonas citri subsp. citri A306]
MPQVIFAPAAIGDMQRLREFLKPKSPDAARRAGEAIRRGVQALGAHPRMGRLIEDLPEQYREWLIDFGDSGYVARYRHAG
DTVTILAVRHQKEAGY

Download         Length: 291 bp

>T45715 NZ_CP006857:c2828604-2828314 [Xanthomonas citri subsp. citri A306]
ATGCCACAAGTAATCTTTGCGCCGGCGGCGATCGGGGACATGCAACGGCTGCGCGAATTCCTGAAGCCGAAGAGTCCCGA
TGCCGCGAGGCGGGCCGGTGAAGCGATTAGGCGCGGCGTCCAGGCTCTCGGTGCCCACCCTCGAATGGGGCGGCTCATAG
AAGATCTGCCTGAACAGTATCGGGAGTGGCTTATCGATTTTGGGGATAGTGGCTATGTGGCTCGGTACCGCCACGCTGGC
GATACCGTCACGATTTTGGCCGTGCGACACCAGAAGGAAGCGGGGTACTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10810.11 Da        Isoelectric Point: 4.9736

>AT45715 WP_004541313.1 NZ_CP006857:c2828870-2828592 [Xanthomonas citri subsp. citri A306]
MVTATSIKLDDELKGRVQHLAEARRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK

Download         Length: 279 bp

>AT45715 NZ_CP006857:c2828870-2828592 [Xanthomonas citri subsp. citri A306]
ATGGTTACGGCAACTTCCATCAAGCTTGATGATGAATTGAAAGGGCGGGTTCAGCACTTGGCCGAGGCGCGCCGGCGTAC
CCCGCATTGGATCATGCGCGAAGCCATTGAGCAGTACGTCGAGCGCGAGGAAAAGCGTGAGGCGTTGAACCGGGACACGC
TCAAGGCATGGGATGAATTTCAGGCGACGGGCCTGCACGTGACCGCTGAGGAAGTGGACAAGTGGCTCGCGAGCTGGGGA
ACAGACGACGAACTGCCTCCGCCAGAATGCCACAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBM4UBZ0

References