Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2817148..2817704 Replicon chromosome
Accession NZ_CP009010
Organism Xanthomonas citri pv. citri strain JX5

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag AMD20_RS12790 Protein ID WP_011051576.1
Coordinates 2817148..2817438 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag AMD20_RS12795 Protein ID WP_040259533.1
Coordinates 2817426..2817704 (-) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AMD20_RS24915 2812459..2812599 - 141 WP_157860651.1 hypothetical protein -
AMD20_RS25080 2812885..2813841 - 957 WP_011051571.1 hypothetical protein -
AMD20_RS12765 2813908..2815041 - 1134 Protein_2399 IS5 family transposase -
AMD20_RS12770 2815081..2816168 - 1088 Protein_2400 IS3 family transposase -
AMD20_RS12780 2816381..2816560 - 180 WP_015463309.1 hypothetical protein -
AMD20_RS12785 2816831..2817145 - 315 WP_015463310.1 hypothetical protein -
AMD20_RS12790 2817148..2817438 - 291 WP_011051576.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AMD20_RS12795 2817426..2817704 - 279 WP_040259533.1 CopG family ribbon-helix-helix protein Antitoxin
AMD20_RS12800 2817874..2819142 - 1269 Protein_2405 transposase -
AMD20_RS12810 2819191..2820416 + 1226 Protein_2406 IS3 family transposase -
AMD20_RS12815 2821035..2821991 + 957 WP_015463313.1 recombinase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 2809318..2835839 26521
inside IScluster/Tn - - 2813908..2820416 6508


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10831.41 Da        Isoelectric Point: 9.9308

>T48066 WP_011051576.1 NZ_CP009010:c2817438-2817148 [Xanthomonas citri pv. citri]
MPQVIFAPAAIGDMQRLREFLKPKSPDAARRAGEAIRRGVQALGAHPRMGRLIEDLPEQYREWLIDFGDSGYVARYRHAG
DTVTILAVRHQKEAGY

Download         Length: 291 bp

>T48066 NZ_CP009010:c2817438-2817148 [Xanthomonas citri pv. citri]
ATGCCACAAGTAATCTTTGCGCCGGCGGCGATCGGGGACATGCAACGGCTGCGCGAATTCCTGAAGCCGAAGAGTCCCGA
TGCCGCGAGGCGGGCCGGTGAAGCGATTAGGCGCGGCGTCCAGGCTCTCGGTGCCCACCCTCGAATGGGGCGGCTCATAG
AAGATCTGCCTGAACAGTATCGGGAGTGGCTTATCGATTTTGGGGATAGTGGCTATGTGGCTCGGTACCGCCACGCTGGC
GATACCGTCACGATTTTGGCCGTGCGACACCAGAAGGAAGCGGGGTACTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10829.16 Da        Isoelectric Point: 4.9801

>AT48066 WP_040259533.1 NZ_CP009010:c2817704-2817426 [Xanthomonas citri pv. citri]
MVTATSIKLDDELKGRVQHLAEARRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLRVTAEEVDKWLASWG
TDDELPPPECHK

Download         Length: 279 bp

>AT48066 NZ_CP009010:c2817704-2817426 [Xanthomonas citri pv. citri]
ATGGTTACGGCAACTTCCATCAAGCTTGATGATGAATTGAAAGGGCGGGTTCAGCACTTGGCCGAGGCGCGCCGGCGTAC
CCCGCATTGGATCATGCGCGAAGCCATTGAGCAGTACGTCGAGCGCGAGGAAAAGCGTGAGGCGTTGAACCGGGACACGC
TCAAGGCATGGGATGAATTTCAGGCGACGGGCCTGCGCGTGACCGCTGAGGAAGTGGACAAGTGGCTCGCGAGCTGGGGA
ACAGACGACGAACTGCCTCCGCCAGAATGCCACAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References