Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2817566..2818122 Replicon chromosome
Accession NZ_CP008992
Organism Xanthomonas citri subsp. citri UI6

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag AMD19_RS12800 Protein ID WP_011051576.1
Coordinates 2817566..2817856 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID M4UBZ0
Locus tag AMD19_RS12805 Protein ID WP_004541313.1
Coordinates 2817844..2818122 (-) Length 93 a.a.

Genomic Context

AMD19_RS12820AMD19_RS12825AMD19_RS25360AMD19_RS12775AMD19_RS12780AMD19_RS12790AMD19_RS12795AMD19_RS12800AMD19_RS12805AMD19_RS12810
Location: 2819609..2820834 (1226 bp)
Type: Others
Protein ID: Protein_2401
Location: 2821454..2822410 (957 bp)
Type: Others
Protein ID: WP_015463313.1
Location: 2813303..2814259 (957 bp)
Type: Others
Protein ID: WP_011051571.1
Location: 2814326..2815459 (1134 bp)
Type: Others
Protein ID: Protein_2394
Location: 2815499..2816586 (1088 bp)
Type: Others
Protein ID: Protein_2395
Location: 2816799..2816978 (180 bp)
Type: Others
Protein ID: WP_015463309.1
Location: 2817249..2817563 (315 bp)
Type: Others
Protein ID: WP_015463310.1
Location: 2817566..2817856 (291 bp)
Type: Toxin
Protein ID: WP_011051576.1
Location: 2817844..2818122 (279 bp)
Type: Antitoxin
Protein ID: WP_004541313.1
Location: 2818292..2819560 (1269 bp)
Type: Others
Protein ID: Protein_2400
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AMD19_RS253602813303..2814259-957WP_011051571.1hypothetical protein-
AMD19_RS127752814326..2815459-1134Protein_2394IS5 family transposase-
AMD19_RS127802815499..2816586-1088Protein_2395IS3 family transposase-
AMD19_RS127902816799..2816978-180WP_015463309.1hypothetical protein-
AMD19_RS127952817249..2817563-315WP_015463310.1hypothetical protein-
AMD19_RS128002817566..2817856-291WP_011051576.1type II toxin-antitoxin system RelE/ParE family toxinToxin
AMD19_RS128052817844..2818122-279WP_004541313.1CopG family ribbon-helix-helix proteinAntitoxin
AMD19_RS128102818292..2819560-1269Protein_2400transposase-
AMD19_RS128202819609..2820834+1226Protein_2401IS3 family transposase-
AMD19_RS128252821454..2822410+957WP_015463313.1recombinase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
insideGenomic island--2809736..283625826522
insideIScluster/Tn--2814326..28208346508


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10831.41 Da        Isoelectric Point: 9.9308

>T48018 WP_011051576.1 NZ_CP008992:c2817856-2817566 [Xanthomonas citri subsp. citri UI6]
MPQVIFAPAAIGDMQRLREFLKPKSPDAARRAGEAIRRGVQALGAHPRMGRLIEDLPEQYREWLIDFGDSGYVARYRHAG
DTVTILAVRHQKEAGY

Download         Length: 291 bp

>T48018 NZ_CP008992:c2817856-2817566 [Xanthomonas citri subsp. citri UI6]
ATGCCACAAGTAATCTTTGCGCCGGCGGCGATCGGGGACATGCAACGGCTGCGCGAATTCCTGAAGCCGAAGAGTCCCGA
TGCCGCGAGGCGGGCCGGTGAAGCGATTAGGCGCGGCGTCCAGGCTCTCGGTGCCCACCCTCGAATGGGGCGGCTCATAG
AAGATCTGCCTGAACAGTATCGGGAGTGGCTTATCGATTTTGGGGATAGTGGCTATGTGGCTCGGTACCGCCACGCTGGC
GATACCGTCACGATTTTGGCCGTGCGACACCAGAAGGAAGCGGGGTACTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10810.11 Da        Isoelectric Point: 4.9736

>AT48018 WP_004541313.1 NZ_CP008992:c2818122-2817844 [Xanthomonas citri subsp. citri UI6]
MVTATSIKLDDELKGRVQHLAEARRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK

Download         Length: 279 bp

>AT48018 NZ_CP008992:c2818122-2817844 [Xanthomonas citri subsp. citri UI6]
ATGGTTACGGCAACTTCCATCAAGCTTGATGATGAATTGAAAGGGCGGGTTCAGCACTTGGCCGAGGCGCGCCGGCGTAC
CCCGCATTGGATCATGCGCGAAGCCATTGAGCAGTACGTCGAGCGCGAGGAAAAGCGTGAGGCGTTGAACCGGGACACGC
TCAAGGCATGGGATGAATTTCAGGCGACGGGCCTGCACGTGACCGCTGAGGAAGTGGACAAGTGGCTCGCGAGCTGGGGA
ACAGACGACGAACTGCCTCCGCCAGAATGCCACAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBM4UBZ0

References