242888

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2836140..2836696 Replicon chromosome
Accession NZ_CP096227
Organism Xanthomonas citri pv. citri strain CQ13

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag XCQ_RS12420 Protein ID WP_230598886.1
Coordinates 2836140..2836391 (-) Length 84 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag XCQ_RS12425 Protein ID WP_040259533.1
Coordinates 2836418..2836696 (-) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XCQ_RS12395 (XCQ_12395) 2831877..2832833 - 957 WP_011051571.1 hypothetical protein -
XCQ_RS12400 (XCQ_12400) 2832900..2834033 - 1134 Protein_2422 IS5 family transposase -
XCQ_RS12410 (XCQ_12410) 2835373..2835627 - 255 WP_223293127.1 hypothetical protein -
XCQ_RS22605 2835696..2835830 - 135 WP_011051575.1 hypothetical protein -
XCQ_RS12415 (XCQ_12415) 2835823..2836137 - 315 WP_015463310.1 hypothetical protein -
XCQ_RS12420 (XCQ_12420) 2836140..2836391 - 252 WP_230598886.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
XCQ_RS12425 (XCQ_12425) 2836418..2836696 - 279 WP_040259533.1 CopG family ribbon-helix-helix protein Antitoxin
XCQ_RS12430 (XCQ_12430) 2836866..2838134 - 1269 Protein_2429 Tn3 family transposase -
XCQ_RS12435 (XCQ_12435) 2838183..2839408 + 1226 Protein_2430 IS3 family transposase -
XCQ_RS12440 (XCQ_12440) 2840044..2840751 + 708 Protein_2431 recombinase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 2828310..2854830 26520
inside IScluster/Tn - - 2832900..2839408 6508


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-81)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 84 a.a.        Molecular weight: 9519.85 Da        Isoelectric Point: 10.2314

>T242888 WP_230598886.1 NZ_CP096227:c2836391-2836140 [Xanthomonas citri pv. citri]
MQRLREFLKPKSPDAARRAGEAIRRGVQALGAHPRMGRLIEDLPEQYREWLIDFGDSGYVARYRHAGDTVTILAVRHQKE
AGY

Download         Length: 252 bp

>T242888 NZ_OW967975:3538168-3538386 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10829.16 Da        Isoelectric Point: 4.9801

>AT242888 WP_040259533.1 NZ_CP096227:c2836696-2836418 [Xanthomonas citri pv. citri]
MVTATSIKLDDELKGRVQHLAEARRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLRVTAEEVDKWLASWG
TDDELPPPECHK

Download         Length: 279 bp

>AT242888 NZ_OW967975:3537768-3538142 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTAAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References