MGE detailed information
MGE type: Integron MGE length: 101036 bp
Accession: NZ_CP006948 Location: 309725..410760 Organism: Vibrio cholerae O1 str. KW3 Replicon: chromosome
Accession: NZ_CP006948 Location: 309725..410760 Organism: Vibrio cholerae O1 str. KW3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N900_RS15340 () | 305175..305846 | + | 672 | WP_000132861.1 | hypothetical protein | - |
| N900_RS20265 () | 305971..306198 | + | 228 | WP_001911595.1 | hypothetical protein | - |
| N900_RS15350 () | 306467..308395 | + | 1929 | WP_001121779.1 | threonine--tRNA ligase | - |
| N900_RS15355 () | 308399..308950 | + | 552 | WP_001894072.1 | translation initiation factor IF-3 | - |
| N900_RS15360 () | 309054..309248 | + | 195 | WP_001885060.1 | 50S ribosomal protein L35 | - |
| N900_RS15365 () | 309290..309643 | + | 354 | WP_001138366.1 | 50S ribosomal protein L20 | - |
| N900_RS15370 () | 309725..310687 | - | 963 | WP_000841995.1 | IS91 family transposase ISAzo26 | Transposase |
| N900_RS19390 () | 311167..311334 | + | 168 | WP_001883086.1 | DUF3265 domain-containing protein | - |
| N900_RS15375 () | 311363..311689 | + | 327 | WP_001921550.1 | hypothetical protein | - |
| N900_RS20335 () | 311733..311822 | + | 90 | WP_072615218.1 | DUF3265 domain-containing protein | - |
| N900_RS15380 () | 312486..312668 | + | 183 | WP_000923182.1 | DUF645 family protein | - |
| N900_RS15385 () | 312924..313175 | + | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| N900_RS19405 () | 313148..313297 | + | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| N900_RS15390 () | 313328..313759 | + | 432 | WP_000795498.1 | hypothetical protein | - |
| N900_RS15395 () | 313910..314539 | + | 630 | WP_001009012.1 | Chloramphenicol acetyltransferase | VF |
| N900_RS15400 () | 314695..315447 | + | 753 | WP_000116045.1 | putative oxidoreductase YgfF | VF |
| N900_RS19410 () | 315545..315724 | + | 180 | WP_001203705.1 | hypothetical protein | - |
| N900_RS15405 () | 315749..315931 | + | 183 | WP_000923334.1 | DUF645 family protein | - |
| N900_RS15410 () | 316136..316513 | + | 378 | WP_000411106.1 | hypothetical protein | - |
| N900_RS15415 () | 316809..316991 | + | 183 | WP_000923340.1 | DUF645 family protein | - |
| N900_RS15425 () | 317345..317527 | + | 183 | WP_000923153.1 | DUF645 family protein | - |
| N900_RS15430 () | 317722..318399 | + | 678 | WP_000254617.1 | HNH endonuclease | - |
| N900_RS15435 () | 318561..319769 | + | 1209 | WP_000272282.1 | deoxyguanosinetriphosphate triphosphohydrolase family protein | - |
| N900_RS15440 () | 319931..320635 | + | 705 | WP_000087610.1 | HNH endonuclease | - |
| N900_RS15445 () | 320793..321131 | + | 339 | WP_000713853.1 | hypothetical protein | - |
| N900_RS15450 () | 321285..321602 | - | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N900_RS15455 () | 321621..321863 | - | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| N900_RS15460 () | 322107..322493 | + | 387 | WP_001015867.1 | NUDIX hydrolase | - |
| N900_RS19420 () | 322550..322663 | + | 114 | WP_001900214.1 | hypothetical protein | - |
| N900_RS15465 () | 322672..322892 | + | 221 | Protein_279 | DUF1289 domain-containing protein | - |
| N900_RS15475 () | 323150..323686 | + | 537 | WP_000469482.1 | GNAT family N-acetyltransferase | - |
| N900_RS15480 () | 323823..324338 | + | 516 | WP_001201509.1 | lipocalin family protein | - |
| N900_RS15485 () | 324488..324985 | - | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin Detail |
| N900_RS15490 () | 324982..325254 | - | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| N900_RS19910 () | 325647..325772 | + | 126 | WP_001900195.1 | DUF645 family protein | - |
| N900_RS19915 () | 325788..325826 | + | 39 | WP_106019118.1 | hypothetical protein | - |
| N900_RS15500 () | 326022..326468 | + | 447 | WP_000006157.1 | hypothetical protein | - |
| N900_RS15505 () | 326531..327742 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| N900_RS15510 () | 327929..328198 | - | 270 | WP_000277238.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| N900_RS15515 () | 328191..328469 | - | 279 | WP_001258569.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| N900_RS19435 () | 328755..329033 | + | 279 | WP_001921601.1 | DUF3709 domain-containing protein | - |
| N900_RS19930 () | 329285..329491 | + | 207 | Protein_291 | DUF3709 domain-containing protein | - |
| N900_RS19935 () | 329691..329792 | + | 102 | WP_001921603.1 | hypothetical protein | - |
| N900_RS15525 () | 329782..330168 | + | 387 | WP_000703163.1 | VOC family protein | - |
| N900_RS15530 () | 330363..330614 | + | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| N900_RS19445 () | 330587..330736 | + | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| N900_RS15535 () | 330828..331070 | + | 243 | WP_000107461.1 | hypothetical protein | - |
| N900_RS19450 () | 331214..331599 | + | 386 | Protein_297 | DUF3709 domain-containing protein | - |
| N900_RS20340 () | 331974..332117 | + | 144 | Protein_298 | DUF645 family protein | - |
| N900_RS20345 () | 332171..332209 | + | 39 | WP_082798268.1 | hypothetical protein | - |
| N900_RS15545 () | 332421..332888 | + | 468 | WP_001289288.1 | OsmC family protein | - |
| N900_RS15550 () | 333016..333678 | + | 663 | WP_000960654.1 | hypothetical protein | - |
| N900_RS15555 () | 333863..334129 | + | 267 | WP_000589156.1 | BrnT family toxin | Toxin Detail |
| N900_RS15560 () | 334116..334361 | + | 246 | WP_000643598.1 | hypothetical protein | Antitoxin Detail |
| N900_RS15565 () | 334457..335251 | + | 795 | WP_001911581.1 | hypothetical protein | - |
| N900_RS15570 () | 335542..335724 | + | 183 | WP_000923182.1 | DUF645 family protein | - |
| N900_RS15575 () | 335938..336942 | + | 1005 | WP_000964920.1 | LD-carboxypeptidase | - |
| N900_RS15580 () | 337095..337454 | + | 360 | WP_001071541.1 | VOC family protein | - |
| N900_RS15585 () | 337727..337960 | + | 234 | WP_001890112.1 | DUF3709 domain-containing protein | - |
| N900_RS15590 () | 338228..338734 | + | 507 | WP_000393074.1 | hypothetical protein | - |
| N900_RS15595 () | 338891..339277 | + | 387 | WP_000703163.1 | VOC family protein | - |
| N900_RS15600 () | 339534..339737 | + | 204 | WP_001911580.1 | hypothetical protein | - |
| N900_RS15605 () | 339932..340183 | + | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| N900_RS19490 () | 340156..340305 | + | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| N900_RS15610 () | 340452..340877 | + | 426 | WP_000415750.1 | hypothetical protein | - |
| N900_RS15615 () | 341083..341706 | + | 624 | WP_000247070.1 | DUF1349 domain-containing protein | - |
| N900_RS15620 () | 341919..342398 | + | 480 | WP_000009888.1 | lecithin retinol acyltransferase family protein | - |
| N900_RS15625 () | 342586..342999 | + | 414 | WP_000049420.1 | VOC family protein | - |
| N900_RS15630 () | 343150..343428 | - | 279 | WP_000578476.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| N900_RS15635 () | 343425..343709 | - | 285 | WP_000381183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| N900_RS19500 () | 343904..344417 | + | 514 | Protein_320 | lipocalin family protein | - |
| N900_RS15645 () | 344482..345078 | + | 597 | WP_000255434.1 | hypothetical protein | - |
| N900_RS15650 () | 345470..345652 | + | 183 | WP_000923182.1 | DUF645 family protein | - |
| N900_RS15655 () | 345852..346325 | + | 474 | WP_001161076.1 | GrpB family protein | - |
| N900_RS19510 () | 346340..346432 | + | 93 | WP_014378730.1 | DUF3265 domain-containing protein | - |
| N900_RS15660 () | 346474..347100 | + | 627 | WP_000365424.1 | LysE family translocator | - |
| N900_RS15665 () | 347223..347921 | + | 699 | WP_001890502.1 | hypothetical protein | - |
| N900_RS19515 () | 347931..348041 | + | 111 | WP_079857360.1 | DUF3265 domain-containing protein | - |
| N900_RS15675 () | 348619..348798 | + | 180 | WP_001883058.1 | DUF645 family protein | - |
| N900_RS15680 () | 349012..349407 | + | 396 | WP_000870857.1 | DUF3465 domain-containing protein | - |
| N900_RS15685 () | 349535..349834 | - | 300 | WP_000802136.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N900_RS15690 () | 349831..350073 | - | 243 | WP_001107719.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| N900_RS15695 () | 350302..350880 | + | 579 | WP_000110120.1 | hypothetical protein | - |
| N900_RS19525 () | 350902..350994 | + | 93 | WP_014164112.1 | DUF3265 domain-containing protein | - |
| N900_RS15705 () | 351418..352101 | + | 684 | WP_000877436.1 | hypothetical protein | - |
| N900_RS15710 () | 352315..352581 | + | 267 | WP_000937852.1 | hypothetical protein | - |
| N900_RS15715 () | 352736..353335 | + | 600 | WP_000429495.1 | hypothetical protein | - |
| N900_RS15720 () | 353597..354550 | + | 954 | WP_080033341.1 | restriction endonuclease | - |
| N900_RS19540 () | 354516..354656 | + | 141 | WP_001883049.1 | DUF3265 domain-containing protein | - |
| N900_RS15725 () | 354768..355790 | + | 1023 | WP_000954291.1 | hypothetical protein | - |
| N900_RS15730 () | 355831..356337 | + | 507 | WP_001921103.1 | hypothetical protein | - |
| N900_RS15735 () | 356398..357093 | - | 696 | WP_000213836.1 | hypothetical protein | - |
| N900_RS15750 () | 358685..359692 | + | 1008 | WP_000093800.1 | DUF4365 domain-containing protein | - |
| N900_RS19985 () | 359689..359799 | + | 111 | Protein_344 | DUF3265 domain-containing protein | - |
| N900_RS15755 () | 359917..360195 | + | 279 | WP_000280319.1 | DUF3709 domain-containing protein | - |
| N900_RS15760 () | 360448..360843 | + | 396 | WP_000046952.1 | hypothetical protein | - |
| N900_RS19550 () | 361146..361327 | + | 182 | Protein_347 | DUF645 family protein | - |
| N900_RS15765 () | 361504..361899 | + | 396 | WP_000046953.1 | hypothetical protein | - |
| N900_RS15770 () | 362043..362579 | + | 537 | WP_000644491.1 | nucleotidyltransferase family protein | - |
| N900_RS15780 () | 362876..363055 | + | 180 | WP_001883039.1 | DUF645 family protein | - |
| N900_RS15785 () | 363251..363676 | + | 426 | WP_000403014.1 | GNAT family N-acetyltransferase | - |
| N900_RS15790 () | 363825..364172 | + | 348 | WP_000933409.1 | hypothetical protein | - |
| N900_RS20185 () | 364319..364612 | + | 294 | WP_125460920.1 | hypothetical protein | - |
| N900_RS20350 () | 364967..365062 | + | 96 | WP_001907607.1 | DUF645 family protein | - |
| N900_RS15795 () | 365256..365573 | - | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N900_RS15800 () | 365592..365834 | - | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| N900_RS15805 () | 366076..366585 | + | 510 | WP_000405987.1 | GNAT family N-acetyltransferase | - |
| N900_RS15810 () | 366642..367295 | + | 654 | WP_000226874.1 | hypothetical protein | - |
| N900_RS15815 () | 367605..367823 | + | 219 | WP_001917086.1 | DUF3709 domain-containing protein | - |
| N900_RS19580 () | 368226..368459 | + | 234 | WP_032482776.1 | DUF3709 domain-containing protein | - |
| N900_RS15820 () | 368884..369064 | + | 181 | Protein_361 | DUF645 family protein | - |
| N900_RS15825 () | 369331..369618 | + | 288 | WP_001162670.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N900_RS15830 () | 369629..369946 | + | 318 | WP_001232701.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| N900_RS20355 () | 369943..370053 | + | 111 | WP_134814058.1 | DUF3265 domain-containing protein | - |
| N900_RS20360 () | 370230..370355 | + | 126 | WP_001944767.1 | DUF645 family protein | - |
| N900_RS20365 () | 370371..370409 | + | 39 | WP_106019119.1 | hypothetical protein | - |
| N900_RS15840 () | 370657..371625 | + | 969 | WP_016710711.1 | LD-carboxypeptidase | - |
| N900_RS15850 () | 372343..373272 | + | 930 | WP_000335802.1 | hypothetical protein | - |
| N900_RS20015 () | 373269..373379 | + | 111 | WP_071917832.1 | DUF3265 domain-containing protein | - |
| N900_RS15855 () | 373407..373883 | + | 477 | WP_001047180.1 | GNAT family N-acetyltransferase | - |
| N900_RS15860 () | 374020..374535 | + | 516 | WP_001201528.1 | lipocalin family protein | - |
| N900_RS15865 () | 374671..374961 | - | 291 | WP_000221352.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N900_RS15870 () | 374951..375199 | - | 249 | WP_000213183.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| N900_RS15885 () | 375770..376423 | + | 654 | WP_000036957.1 | site-specific DNA-methyltransferase | - |
| N900_RS15890 () | 376695..377120 | + | 426 | WP_000415748.1 | hypothetical protein | - |
| N900_RS15895 () | 377328..377724 | + | 397 | Protein_376 | DUF3465 domain-containing protein | - |
| N900_RS15900 () | 377875..378405 | + | 531 | WP_000415563.1 | hypothetical protein | - |
| N900_RS15905 () | 378543..379043 | + | 501 | WP_000789723.1 | hypothetical protein | - |
| N900_RS15910 () | 379199..379597 | + | 399 | WP_001882293.1 | hypothetical protein | - |
| N900_RS15915 () | 379697..380161 | - | 465 | WP_000140244.1 | hypothetical protein | - |
| N900_RS15920 () | 380544..381529 | - | 986 | Protein_381 | Sulfate-binding protein | VF |
| N900_RS15925 () | 381780..382358 | + | 579 | WP_001020575.1 | DJ-1/PfpI family protein | - |
| N900_RS19615 () | 382662..382832 | + | 171 | WP_001882300.1 | DUF645 family protein | - |
| N900_RS15930 () | 383155..383769 | + | 615 | WP_000789575.1 | hypothetical protein | - |
| N900_RS15935 () | 383916..384773 | + | 858 | WP_001279526.1 | DUF2806 domain-containing protein | - |
| N900_RS15940 () | 384929..385480 | + | 552 | WP_000821930.1 | hypothetical protein | - |
| N900_RS20275 () | 385767..385970 | + | 204 | WP_001911745.1 | hypothetical protein | - |
| N900_RS20040 () | 386251..386424 | + | 174 | WP_001882305.1 | DUF3709 domain-containing protein | - |
| N900_RS15950 () | 386784..387053 | + | 270 | WP_001198131.1 | hypothetical protein | - |
| N900_RS19635 () | 387371..387542 | + | 172 | Protein_390 | DUF645 family protein | - |
| N900_RS15955 () | 387750..388136 | + | 387 | WP_000703163.1 | VOC family protein | - |
| N900_RS15960 () | 388338..388580 | + | 243 | WP_000107461.1 | hypothetical protein | - |
| N900_RS15965 () | 388751..389128 | + | 378 | WP_000411109.1 | hypothetical protein | - |
| N900_RS20370 () | 389185..389299 | + | 115 | Protein_394 | acetyltransferase | - |
| N900_RS15970 () | 389248..389529 | + | 282 | WP_001894453.1 | DUF1289 domain-containing protein | - |
| N900_RS19650 () | 389694..389807 | + | 114 | WP_001889158.1 | hypothetical protein | - |
| N900_RS19655 () | 389756..389983 | + | 228 | WP_073426587.1 | DUF1289 domain-containing protein | - |
| N900_RS15980 () | 390324..390656 | + | 333 | WP_000843587.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N900_RS15985 () | 390643..390957 | + | 315 | WP_000071008.1 | DNA-binding transcriptional regulator | Antitoxin Detail |
| N900_RS15990 () | 391094..391528 | + | 435 | WP_000256036.1 | GNAT family N-acetyltransferase | - |
| N900_RS20190 () | 391696..391851 | + | 156 | WP_000751734.1 | hypothetical protein | - |
| N900_RS16000 () | 391976..392956 | - | 981 | WP_000019370.1 | IS5 family transposase ISVch5 | Transposase |
| N900_RS16005 () | 393024..393296 | + | 273 | Protein_403 | Streptogramin A acetyltransferase | VF |
| N900_RS16010 () | 393467..394159 | + | 693 | WP_001047169.1 | GNAT family N-acetyltransferase | Antitoxin Detail |
| N900_RS16015 () | 394159..394560 | + | 402 | WP_000351248.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| N900_RS20050 () | 394530..394673 | + | 144 | WP_071908341.1 | DUF3265 domain-containing protein | - |
| N900_RS16020 () | 394748..395161 | + | 414 | WP_000049417.1 | VOC family protein | - |
| N900_RS16025 () | 395375..395626 | + | 252 | WP_001250179.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| N900_RS16030 () | 395616..395903 | + | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N900_RS16035 () | 396031..396486 | + | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
| N900_RS16040 () | 396808..396960 | + | 153 | WP_001884520.1 | DUF645 family protein | - |
| N900_RS16045 () | 397162..397659 | - | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin Detail |
| N900_RS16050 () | 397656..397928 | - | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| N900_RS16055 () | 398159..398827 | + | 669 | WP_000043871.1 | hypothetical protein | - |
| N900_RS16060 () | 398979..399266 | + | 288 | WP_000426470.1 | hypothetical protein | - |
| N900_RS16065 () | 399407..399778 | + | 372 | WP_001164080.1 | nucleotide pyrophosphohydrolase | - |
| N900_RS16070 () | 399845..400270 | + | 426 | WP_001882332.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| N900_RS16075 () | 400267..400800 | + | 534 | WP_000118351.1 | GNAT family N-acetyltransferase | Toxin Detail |
| N900_RS16080 () | 401002..401259 | + | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| N900_RS16085 () | 401247..401549 | + | 303 | WP_000229317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N900_RS16090 () | 401783..402699 | + | 917 | Protein_421 | Carboxylesterase NlhH | VF |
| N900_RS16095 () | 402856..403245 | + | 390 | WP_001081302.1 | hypothetical protein | - |
| N900_RS16100 () | 403381..403590 | + | 210 | Protein_423 | GNAT family N-acetyltransferase | - |
| N900_RS16105 () | 403709..404146 | + | 438 | WP_000503169.1 | IS200-IS605 family transposase IS1004 | Transposase |
| N900_RS16110 () | 404210..404428 | + | 219 | WP_071908318.1 | GNAT family N-acetyltransferase | - |
| N900_RS16115 () | 404603..405475 | + | 873 | WP_000254716.1 | DUF3800 domain-containing protein | - |
| N900_RS16120 () | 405625..406224 | + | 600 | WP_001891245.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| N900_RS20070 () | 406281..406385 | + | 105 | WP_099607150.1 | acetyltransferase | Antitoxin Detail |
| N900_RS16125 () | 406416..406685 | + | 270 | WP_001114075.1 | DUF4160 domain-containing protein | Toxin Detail |
| N900_RS16130 () | 406679..407200 | + | 522 | WP_000921691.1 | DUF2442 domain-containing protein | Antitoxin Detail |
| N900_RS20075 () | 407499..407624 | + | 126 | WP_001905700.1 | DUF645 family protein | - |
| N900_RS16135 () | 407875..408270 | + | 396 | WP_001000867.1 | hypothetical protein | - |
| N900_RS16140 () | 408409..408687 | - | 279 | WP_000578476.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| N900_RS16145 () | 408684..408968 | - | 285 | WP_000381183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| N900_RS16150 () | 409161..409676 | + | 516 | WP_000343779.1 | dTDP-fucosamine acetyltransferase | VF |
| N900_RS16155 () | 409860..410273 | + | 414 | WP_000049420.1 | VOC family protein | - |
| N900_RS16165 () | 410828..412004 | + | 1177 | Protein_437 | IS3-like element ISVch4 family transposase | - |
| N900_RS16170 () | 412423..415200 | + | 2778 | WP_000509636.1 | alkaline phosphatase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Vibrio cholerae O1 biovar El Tor str. N16961 | Integron | TA164, TA169, TA166, TA167, TA179, TA170, TA171, TA172, TA173, TA174, TA175, TA176, TA177, TA178, TA168, TA165, TA10030, TA10035 | NC_002506 | 309750..435387 | 0.004 |