TAfinder detailed results

Overview

Job ID wrVbGpMxFf
Sequence name NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome
Predicted type II

Toxin (Protein)


Predicted family yafQ (T6290) Predicted domain COG3041 (YafQ)
Locus tag orf3578 Length 92 a.a.
Coordinates 3794379..3794657 (+)

Antitoxin (Protein)


Predicted family dinJ (AT6290) Predicted domain PF04221 (RelB)
Locus tag orf3577 Length 86 a.a.
Coordinates 3794116..3794376 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
orf3572 3789152..3790291 + 1140 ORF3572 Predicted ORF by PRODIGAL Version 1.20 -
orf3573 3790275..3792368 + 2094 ORF3573 Predicted ORF by PRODIGAL Version 1.20 -
orf3574 3792473..3792751 + 279 ORF3574 Predicted ORF by PRODIGAL Version 1.20 -
orf3575 3792744..3793100 + 357 ORF3575 Predicted ORF by PRODIGAL Version 1.20 -
orf3576 3793157..3793930 - 774 ORF3576 Predicted ORF by PRODIGAL Version 1.20 -
orf3577 3794116..3794376 + 261 ORF3577 Predicted ORF by PRODIGAL Version 1.20 Antitoxin
orf3578 3794379..3794657 + 279 ORF3578 Predicted ORF by PRODIGAL Version 1.20 Toxin
orf3579 3794813..3795553 + 741 ORF3579 Predicted ORF by PRODIGAL Version 1.20 -
orf3580 3795524..3796291 - 768 ORF3580 Predicted ORF by PRODIGAL Version 1.20 -
orf3581 3796497..3797075 - 579 ORF3581 Predicted ORF by PRODIGAL Version 1.20 -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

COG3041 (YafQ) (E-value: 1.3e-36, Score:122.7)

(2-90)

TIGR00053 (YafQ) (E-value: 9.4e-36, Score:120.3)

(2-89)

YafQ_toxin (YafQ) (E-value: 8.8e-33, Score:110.5)

(2-88)

TIGR02385 (RelE) (E-value: 6.2e-25, Score:85.6)

(2-91)

COG4115 (Txe) (E-value: 0.0016, Score:16.6)

(3-84)

TIGR02116 (Txe) (E-value: 0.015, Score:13.6)

(3-83)

Antitoxin

PF04221 (RelB) (E-value: 1.7e-31, Score:106.2)

(1-87)

COG3077 (RelB) (E-value: 8.9e-31, Score:104)

(1-88)

TIGR02384 (DinJ) (E-value: 1.3e-16, Score:58.7)

(5-83)

PRK11235 (RelB) (E-value: 6.2e-08, Score:30.8)

(4-48)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10800.59 Da        Isoelectric Point: 10.0702

>ORF3578 TA_26 Toxin
MIQRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNALPLPAVYKDHPLQGSWKGYR
DAHVEPDWILIYKLTDKLLRFERTGTHAALFG

Download         Length: 279 bp

>ORF3578 TA_26 Toxin
ATGATTCAAAGGGATATTGAATACTCGGGACAATTTTCAAAGGATGTAAAACTTGCACAA
AAGCGTCATAAGGATATGAATAAATTGAAATATCTTATGACGCTTCTTATCAATAATGCT
TTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAGGTTCATGGAAAGGTTATCGC
GATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9391.77 Da        Isoelectric Point: 5.0758

>ORF3577 TA_26 Antitoxin
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQ
SIKNSEAGVDVHKAKDADDLFDKLGI

Download         Length: 261 bp

>ORF3577 TA_26 Antitoxin
ATGGCTGCTAACGCATTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCGGCG
GACGTACTGGCCGGGATGGGGCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAG
GTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGCCTAATCAATTAACCATTCAA
TCAATCAAAAACAGCGAAGCTGGCGTTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T6290 Escherichia coli BW25113

97.826

100

0.978
T1038 Escherichia coli str. K-12 substr. MG1655

97.826

100

0.978
T10190 Pseudomonas sp. strain ANT_J3

46.316

83.333

0.478
T10095 Clostridium difficile R20291

41.573

92.708

0.402
T6256 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222

37.234

97.917

0.38
T665 Streptococcus mutans UA159

38.202

96.739

0.37
T166 Vibrio cholerae O1 biovar El Tor str. N16961

36.782

97.753

0.348
T10181 Aggregatibacter actinomycetemcomitans D11S 1

49.057

60.227

0.283
T6127 Helicobacter pylori 26695

38.636

97.778

0.37
T10111 Lacticaseibacillus paracasei strain 4366 DinJ and YafQ genes

43.333

90

0.424
T10136 Pseudomonas savastanoi

37.647

80.189

0.348
T10112 Lacticaseibacillus paracasei strain 2333 DinJ and YafQ genes

42.222

90

0.413
T28 Helicobacter pylori 26695

42

56.818

0.228
T6286 Campylobacter jejuni subsp. jejuni IA3902

31.818

96.703

0.304
T10070 Tetragenococcus halophilus NBRC 12172

53.061

52.128

0.283
T6289 Bifidobacterium longum subsp. longum JDM301

28.261

94.845

0.283
T6257 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222

28.261

94.845

0.283
T10109 Lacticaseibacillus rhamnosus strain 2360 DinJ and YafQ genes

35.294

89.474

0.326
T10088 Helicobacter pylori P12

42.308

55.914

0.239
T10108 Lacticaseibacillus rhamnosus strain 1473 DinJ and YafQ genes

42.222

73.77

0.207
T10110 Lacticaseibacillus rhamnosus strain 1019 DinJ and YafQ genes

42.222

73.77

0.207
T6239 Lactobacillus rhamnosus ATCC 8530

42.222

73.77

0.207
T6144 Lactobacillus rhamnosus ATCC 8530

42.222

73.77

0.207
T6139 Lactobacillus rhamnosus Lc 705

42.222

73.77

0.207
T6146 Proteus vulgaris

32.258

33.696

0.109
Protein Organism Identities (%) Coverage (%) Ha-value
AT6290 Escherichia coli BW25113

98.837

100

0.988
AT1038 Escherichia coli str. K-12 substr. MG1655

98.837

100

0.988
AT6097 Sinorhizobium meliloti 1021

56.863

50

0.337
AT10190 Pseudomonas sp. strain ANT_J3

38.961

88.506

0.349
AT10136 Pseudomonas savastanoi

35.366

75.229

0.337
AT166 Vibrio cholerae O1 biovar El Tor str. N16961

29.63

88.043

0.279
AT6289 Bifidobacterium longum subsp. longum JDM301

27.907

96.629

0.279
AT10112 Lacticaseibacillus paracasei strain 2333 DinJ and YafQ genes

31.25

89.888

0.291
AT10181 Aggregatibacter actinomycetemcomitans D11S 1

29.487

86.667

0.267
AT10111 Lacticaseibacillus paracasei strain 4366 DinJ and YafQ genes

30

89.888

0.279
AT10095 Clostridium difficile R20291

29.885

94.565

0.302
AT6256 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222

29.31

63.043

0.198
AT6257 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222

28.736

97.753

0.291
AT6261 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222

41.026

32.5

0.186
AT10110 Lacticaseibacillus rhamnosus strain 1019 DinJ and YafQ genes

30.667

83.333

0.267
AT6239 Lactobacillus rhamnosus ATCC 8530

30.667

83.333

0.267
AT6144 Lactobacillus rhamnosus ATCC 8530

30.667

83.333

0.267
AT6139 Lactobacillus rhamnosus Lc 705

30.667

83.333

0.267
AT6023 Xenorhabdus nematophila ATCC 19061

37.209

51.19

0.186
AT665 Streptococcus mutans UA159

38.182

61.111

0.244
AT1041 Escherichia coli str. K-12 substr. MG1655

37.209

54.43

0.186
AT10109 Lacticaseibacillus rhamnosus strain 2360 DinJ and YafQ genes

28

83.333

0.244
AT6258 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222

28.814

62.766

0.198
AT10070 Tetragenococcus halophilus NBRC 12172

24.675

95.062

0.221
AT10048 Mycoplasma mycoides subsp. capri str. GM12

25.806

68.889

0.186
AT6259 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222

30.769

40.206

0.14