MGE detailed information
MGE type: Integron MGE length: 89809 bp
Accession: NZ_LT992487 Location: 897901..987709 Organism: Vibrio cholerae strain 4295STDY6534216 Replicon: chromosome
Accession: NZ_LT992487 Location: 897901..987709 Organism: Vibrio cholerae strain 4295STDY6534216 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DG247_RS18305 () | 893460..896237 | - | 2778 | WP_000509635.1 | alkaline phosphatase family protein | - |
| DG247_RS18325 () | 898388..898801 | - | 414 | WP_000049420.1 | VOC family protein | - |
| DG247_RS18335 () | 898985..899500 | - | 516 | WP_000343779.1 | hypothetical protein | VF |
| DG247_RS18340 () | 899694..899978 | + | 285 | WP_000381183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| DG247_RS18345 () | 899975..900253 | + | 279 | WP_000578476.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| DG247_RS18350 () | 900392..900787 | - | 396 | WP_001000867.1 | hypothetical protein | - |
| DG247_RS18360 () | 901038..901163 | - | 126 | WP_001905700.1 | DUF645 family protein | - |
| DG247_RS18365 () | 901462..901983 | - | 522 | WP_000921691.1 | DUF2442 domain-containing protein | Antitoxin Detail |
| DG247_RS18370 () | 901977..902246 | - | 270 | WP_001114075.1 | DUF4160 domain-containing protein | Toxin Detail |
| DG247_RS18375 () | 902277..902381 | - | 105 | WP_099607150.1 | acetyltransferase | Antitoxin Detail |
| DG247_RS18380 () | 902438..903037 | - | 600 | WP_001891245.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| DG247_RS18385 () | 903187..904059 | - | 873 | WP_000254716.1 | DUF3800 domain-containing protein | - |
| DG247_RS18390 () | 904234..904452 | - | 219 | WP_071908318.1 | GNAT family N-acetyltransferase | - |
| DG247_RS18395 () | 904516..904953 | - | 438 | WP_000503169.1 | IS200-IS605 family transposase IS1004 | Transposase |
| DG247_RS18400 () | 905072..905281 | - | 210 | Protein_767 | GNAT family N-acetyltransferase | - |
| DG247_RS18405 () | 905417..905806 | - | 390 | WP_001081302.1 | hypothetical protein | - |
| DG247_RS18410 () | 905963..906880 | - | 918 | WP_000186333.1 | alpha/beta hydrolase | - |
| DG247_RS18415 () | 907114..907416 | - | 303 | WP_000229317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DG247_RS18420 () | 907404..907661 | - | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| DG247_RS18430 () | 907863..908396 | - | 534 | WP_000118351.1 | GNAT family N-acetyltransferase | Toxin Detail |
| DG247_RS18435 () | 908393..908818 | - | 426 | WP_001882332.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| DG247_RS18440 () | 908885..909256 | - | 372 | WP_001164080.1 | nucleotide pyrophosphohydrolase | - |
| DG247_RS18445 () | 909397..909684 | - | 288 | WP_000426470.1 | hypothetical protein | - |
| DG247_RS18450 () | 909836..910504 | - | 669 | WP_000043871.1 | hypothetical protein | - |
| DG247_RS18455 () | 910735..911007 | + | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| DG247_RS18460 () | 911004..911501 | + | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin Detail |
| DG247_RS18470 () | 911703..911855 | - | 153 | WP_001884520.1 | DUF645 family protein | - |
| DG247_RS18475 () | 912177..912632 | - | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
| DG247_RS18480 () | 912760..913047 | - | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DG247_RS18485 () | 913037..913288 | - | 252 | WP_001250179.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| DG247_RS18490 () | 913502..913915 | - | 414 | WP_000049417.1 | VOC family protein | - |
| DG247_RS18495 () | 913990..914133 | - | 144 | WP_071908341.1 | DUF3265 domain-containing protein | - |
| DG247_RS18500 () | 914103..914504 | - | 402 | WP_000351248.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| DG247_RS18505 () | 914504..915196 | - | 693 | WP_001047169.1 | GNAT family N-acetyltransferase | Antitoxin Detail |
| DG247_RS18510 () | 915333..915639 | - | 307 | Protein_787 | Streptogramin A acetyltransferase | VF |
| DG247_RS18515 () | 915707..916687 | + | 981 | WP_000019370.1 | IS5 family transposase ISVch5 | Transposase |
| DG247_RS19670 () | 916812..916967 | - | 156 | WP_000751734.1 | hypothetical protein | - |
| DG247_RS18520 () | 917135..917569 | - | 435 | WP_000256036.1 | GNAT family N-acetyltransferase | - |
| DG247_RS18525 () | 917706..918020 | - | 315 | WP_000071008.1 | DNA-binding transcriptional regulator | Antitoxin Detail |
| DG247_RS18530 () | 918007..918339 | - | 333 | WP_000843587.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DG247_RS18540 () | 918680..918907 | - | 228 | WP_001894457.1 | DUF1289 domain-containing protein | - |
| DG247_RS19800 () | 918856..918969 | - | 114 | WP_001889158.1 | hypothetical protein | - |
| DG247_RS18560 () | 919135..919416 | - | 282 | WP_001894453.1 | DUF1289 domain-containing protein | - |
| DG247_RS19805 () | 919365..919479 | - | 115 | Protein_796 | acetyltransferase | - |
| DG247_RS18565 () | 919536..919913 | - | 378 | WP_000411109.1 | hypothetical protein | - |
| DG247_RS18570 () | 920084..920326 | - | 243 | WP_000107461.1 | hypothetical protein | - |
| DG247_RS18575 () | 920528..920914 | - | 387 | WP_000703163.1 | VOC family protein | - |
| DG247_RS19870 () | 921123..921294 | - | 172 | Protein_800 | DUF645 family protein | - |
| DG247_RS18585 () | 921612..921881 | - | 270 | WP_001198131.1 | hypothetical protein | - |
| DG247_RS18590 () | 922241..922414 | - | 174 | WP_001882305.1 | DUF3709 domain-containing protein | - |
| DG247_RS19725 () | 922695..922898 | - | 204 | WP_001911745.1 | hypothetical protein | - |
| DG247_RS18605 () | 923185..923736 | - | 552 | WP_000821930.1 | hypothetical protein | - |
| DG247_RS18610 () | 923892..924749 | - | 858 | WP_001279526.1 | DUF2806 domain-containing protein | - |
| DG247_RS18615 () | 924896..925510 | - | 615 | WP_000789575.1 | hypothetical protein | - |
| DG247_RS18620 () | 925833..926003 | - | 171 | WP_001882300.1 | DUF645 family protein | - |
| DG247_RS18630 () | 926307..926885 | - | 579 | WP_001020575.1 | DJ-1/PfpI family protein | - |
| DG247_RS18635 () | 927136..928121 | + | 986 | Protein_809 | Sulfate-binding protein | VF |
| DG247_RS18640 () | 928504..928968 | + | 465 | WP_000140244.1 | hypothetical protein | - |
| DG247_RS18645 () | 929068..929470 | - | 403 | Protein_811 | hypothetical protein | - |
| DG247_RS18655 () | 929626..930126 | - | 501 | WP_000789723.1 | hypothetical protein | - |
| DG247_RS18660 () | 930264..930794 | - | 531 | WP_000415563.1 | hypothetical protein | - |
| DG247_RS18665 () | 930945..931340 | - | 396 | WP_000649527.1 | DUF3465 domain-containing protein | - |
| DG247_RS18670 () | 931548..931973 | - | 426 | WP_000415748.1 | hypothetical protein | - |
| DG247_RS18675 () | 932245..932898 | - | 654 | WP_000036957.1 | site-specific DNA-methyltransferase | - |
| DG247_RS18690 () | 933469..933717 | + | 249 | WP_000213183.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| DG247_RS18695 () | 933707..933997 | + | 291 | WP_000221352.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DG247_RS18700 () | 934133..934648 | - | 516 | WP_001201528.1 | lipocalin family protein | - |
| DG247_RS18705 () | 934785..935261 | - | 477 | WP_001047180.1 | GNAT family N-acetyltransferase | - |
| DG247_RS18710 () | 935289..935399 | - | 111 | WP_071917832.1 | DUF3265 domain-containing protein | - |
| DG247_RS18715 () | 935396..936325 | - | 930 | WP_000335802.1 | hypothetical protein | - |
| DG247_RS18720 () | 936445..936891 | - | 447 | WP_000128977.1 | hypothetical protein | - |
| DG247_RS18725 () | 937044..938048 | - | 1005 | WP_000964925.1 | LD-carboxypeptidase | - |
| DG247_RS19820 () | 938261..938299 | - | 39 | WP_106019119.1 | hypothetical protein | - |
| DG247_RS19825 () | 938315..938440 | - | 126 | WP_001944767.1 | DUF645 family protein | - |
| DG247_RS19830 () | 938617..938727 | - | 111 | WP_134814058.1 | DUF3265 domain-containing protein | - |
| DG247_RS18750 () | 938724..939041 | - | 318 | WP_001232701.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| DG247_RS18755 () | 939052..939339 | - | 288 | WP_001162670.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DG247_RS18760 () | 939606..939786 | - | 181 | Protein_830 | DUF645 family protein | - |
| DG247_RS18765 () | 940211..940444 | - | 234 | WP_032482776.1 | DUF3709 domain-containing protein | - |
| DG247_RS18770 () | 940847..941065 | - | 219 | WP_001917086.1 | DUF3709 domain-containing protein | - |
| DG247_RS18775 () | 941375..942028 | - | 654 | WP_000226874.1 | hypothetical protein | - |
| DG247_RS18780 () | 942085..942594 | - | 510 | WP_000405987.1 | GNAT family N-acetyltransferase | - |
| DG247_RS18785 () | 942836..943078 | + | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| DG247_RS18790 () | 943097..943414 | + | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DG247_RS19835 () | 943608..943703 | - | 96 | WP_001907607.1 | DUF645 family protein | - |
| DG247_RS19675 () | 944059..944352 | - | 294 | WP_125460920.1 | hypothetical protein | - |
| DG247_RS18810 () | 944499..944846 | - | 348 | WP_000933409.1 | hypothetical protein | - |
| DG247_RS18815 () | 944995..945420 | - | 426 | WP_000403014.1 | GNAT family N-acetyltransferase | - |
| DG247_RS18820 () | 945616..945795 | - | 180 | WP_001883039.1 | DUF645 family protein | - |
| DG247_RS18825 () | 946092..946628 | - | 537 | WP_000644491.1 | nucleotidyltransferase family protein | - |
| DG247_RS18830 () | 946772..947167 | - | 396 | WP_000046953.1 | hypothetical protein | - |
| DG247_RS18835 () | 947344..947525 | - | 182 | Protein_844 | DUF645 family protein | - |
| DG247_RS18840 () | 947828..948223 | - | 396 | WP_000046952.1 | hypothetical protein | - |
| DG247_RS18845 () | 948476..948754 | - | 279 | WP_000280319.1 | DUF3709 domain-containing protein | - |
| DG247_RS18850 () | 948872..948982 | - | 111 | Protein_847 | DUF3265 domain-containing protein | - |
| DG247_RS18855 () | 948979..949986 | - | 1008 | WP_000093800.1 | DUF4365 domain-containing protein | - |
| DG247_RS18865 () | 950404..951581 | + | 1178 | WP_086010879.1 | IS3 family transposase ISVch4 | Transposase |
| DG247_RS18870 () | 951578..952273 | + | 696 | WP_000213836.1 | hypothetical protein | - |
| DG247_RS18875 () | 952334..952840 | - | 507 | WP_001921103.1 | hypothetical protein | - |
| DG247_RS18880 () | 952881..953903 | - | 1023 | WP_000954291.1 | hypothetical protein | - |
| DG247_RS18885 () | 954015..954155 | - | 141 | WP_001883049.1 | DUF3265 domain-containing protein | - |
| DG247_RS18890 () | 954121..955056 | - | 936 | WP_000051985.1 | restriction endonuclease | - |
| DG247_RS18895 () | 955337..955936 | - | 600 | WP_000429495.1 | hypothetical protein | - |
| DG247_RS18905 () | 956091..956357 | - | 267 | WP_000937852.1 | hypothetical protein | - |
| DG247_RS18915 () | 956571..957254 | - | 684 | WP_000877436.1 | hypothetical protein | - |
| DG247_RS18925 () | 957678..957770 | - | 93 | WP_014164112.1 | DUF3265 domain-containing protein | - |
| DG247_RS18930 () | 957792..958370 | - | 579 | WP_000110120.1 | hypothetical protein | - |
| DG247_RS18940 () | 958599..958841 | + | 243 | WP_001107719.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| DG247_RS18945 () | 958838..959137 | + | 300 | WP_000802136.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DG247_RS18950 () | 959265..959660 | - | 396 | WP_000870857.1 | DUF3465 domain-containing protein | - |
| DG247_RS18955 () | 959874..960053 | - | 180 | WP_001883058.1 | DUF645 family protein | - |
| DG247_RS18970 () | 960631..960741 | - | 111 | WP_079857360.1 | DUF3265 domain-containing protein | - |
| DG247_RS18975 () | 960751..961449 | - | 699 | WP_001890502.1 | hypothetical protein | - |
| DG247_RS18980 () | 961572..962198 | - | 627 | WP_000365424.1 | LysE family translocator | - |
| DG247_RS18985 () | 962240..962332 | - | 93 | WP_014378730.1 | DUF3265 domain-containing protein | - |
| DG247_RS18990 () | 962347..962820 | - | 474 | WP_001161076.1 | GrpB family protein | - |
| DG247_RS18995 () | 963020..963202 | - | 183 | WP_000923182.1 | DUF645 family protein | - |
| DG247_RS19840 () | 963263..963391 | - | 129 | WP_071908338.1 | general secretion pathway protein GspI | - |
| DG247_RS19010 () | 963494..964288 | - | 795 | WP_001911581.1 | hypothetical protein | - |
| DG247_RS19015 () | 964384..964629 | - | 246 | WP_000643598.1 | hypothetical protein | Antitoxin Detail |
| DG247_RS19020 () | 964616..964882 | - | 267 | WP_000589156.1 | BrnT family toxin | Toxin Detail |
| DG247_RS19030 () | 965067..965729 | - | 663 | WP_000960654.1 | hypothetical protein | - |
| DG247_RS19035 () | 965857..966324 | - | 468 | WP_001289288.1 | OsmC family protein | - |
| DG247_RS19845 () | 966536..966574 | - | 39 | WP_082798268.1 | hypothetical protein | - |
| DG247_RS19850 () | 966628..966771 | - | 144 | Protein_877 | DUF645 family protein | - |
| DG247_RS19055 () | 967146..967424 | - | 279 | WP_000280324.1 | DUF3709 domain-containing protein | - |
| DG247_RS19060 () | 967676..967918 | - | 243 | WP_000107461.1 | hypothetical protein | - |
| DG247_RS19065 () | 968010..968159 | - | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| DG247_RS19070 () | 968132..968383 | - | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| DG247_RS19075 () | 968578..968964 | - | 387 | WP_000703163.1 | VOC family protein | - |
| DG247_RS19080 () | 968954..969055 | - | 102 | WP_001921603.1 | hypothetical protein | - |
| DG247_RS19085 () | 969255..969461 | - | 207 | Protein_884 | DUF3709 domain-containing protein | - |
| DG247_RS19090 () | 969713..969991 | - | 279 | WP_001921601.1 | DUF3709 domain-containing protein | - |
| DG247_RS19100 () | 970277..970555 | + | 279 | WP_001258569.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| DG247_RS19105 () | 970548..970817 | + | 270 | WP_000277238.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| DG247_RS19110 () | 970965..971411 | - | 447 | WP_000006157.1 | hypothetical protein | - |
| DG247_RS19120 () | 971607..971645 | - | 39 | WP_106019118.1 | hypothetical protein | - |
| DG247_RS19125 () | 971661..971786 | - | 126 | WP_001900195.1 | DUF645 family protein | - |
| DG247_RS19130 () | 972179..972451 | + | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| DG247_RS19135 () | 972448..972945 | + | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin Detail |
| DG247_RS19140 () | 973095..973610 | - | 516 | WP_001201509.1 | lipocalin family protein | - |
| DG247_RS19145 () | 973747..974283 | - | 537 | WP_000469482.1 | GNAT family N-acetyltransferase | - |
| DG247_RS19160 () | 974541..974822 | - | 282 | WP_001894429.1 | DUF1289 domain-containing protein | - |
| DG247_RS19165 () | 974771..974884 | - | 114 | WP_001900214.1 | hypothetical protein | - |
| DG247_RS19170 () | 974941..975327 | - | 387 | WP_001015867.1 | NUDIX hydrolase | - |
| DG247_RS19175 () | 975571..975813 | + | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| DG247_RS19180 () | 975832..976149 | + | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DG247_RS19190 () | 976303..976641 | - | 339 | WP_000713853.1 | hypothetical protein | - |
| DG247_RS19195 () | 976799..977503 | - | 705 | WP_000087610.1 | HNH endonuclease | - |
| DG247_RS19200 () | 977665..978873 | - | 1209 | WP_000272282.1 | deoxyguanosinetriphosphate triphosphohydrolase family protein | - |
| DG247_RS19205 () | 979035..979712 | - | 678 | WP_000254617.1 | HNH endonuclease | - |
| DG247_RS19215 () | 979907..980089 | - | 183 | WP_000923153.1 | DUF645 family protein | - |
| DG247_RS19220 () | 980443..980625 | - | 183 | WP_000923340.1 | DUF645 family protein | - |
| DG247_RS19225 () | 980921..981298 | - | 378 | WP_000411106.1 | hypothetical protein | - |
| DG247_RS19230 () | 981503..981685 | - | 183 | WP_000923334.1 | DUF645 family protein | - |
| DG247_RS19235 () | 981710..981889 | - | 180 | WP_001203705.1 | hypothetical protein | - |
| DG247_RS19240 () | 981987..982739 | - | 753 | WP_000116045.1 | putative oxidoreductase YgfF | VF |
| DG247_RS19250 () | 982895..983524 | - | 630 | WP_001009012.1 | Chloramphenicol acetyltransferase | VF |
| DG247_RS19260 () | 983675..984106 | - | 432 | WP_000795498.1 | hypothetical protein | - |
| DG247_RS19265 () | 984137..984286 | - | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| DG247_RS19270 () | 984259..984510 | - | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| DG247_RS19275 () | 984766..984948 | - | 183 | WP_000923182.1 | DUF645 family protein | - |
| DG247_RS19875 () | 985612..985701 | - | 90 | WP_072615218.1 | DUF3265 domain-containing protein | - |
| DG247_RS19295 () | 985745..986071 | - | 327 | WP_001921550.1 | hypothetical protein | - |
| DG247_RS19300 () | 986100..986267 | - | 168 | WP_001883086.1 | DUF3265 domain-containing protein | - |
| DG247_RS19310 () | 986747..987709 | + | 963 | WP_000841995.1 | IS91 family transposase ISAzo26 | Transposase |
| DG247_RS19315 () | 987791..988144 | - | 354 | WP_001138366.1 | 50S ribosomal protein L20 | - |
| DG247_RS19320 () | 988186..988380 | - | 195 | WP_001885060.1 | 50S ribosomal protein L35 | - |
| DG247_RS19325 () | 988484..989035 | - | 552 | WP_001894072.1 | translation initiation factor IF-3 | - |
| DG247_RS19330 () | 989039..990967 | - | 1929 | WP_001121779.1 | threonine--tRNA ligase | - |
| DG247_RS19735 () | 991236..991463 | - | 228 | WP_001911595.1 | hypothetical protein | - |
| DG247_RS19340 () | 991588..992259 | - | 672 | WP_000132861.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Vibrio cholerae O1 biovar El Tor str. N16961 | Integron | TA164, TA169, TA166, TA167, TA179, TA170, TA171, TA172, TA173, TA174, TA175, TA176, TA177, TA178, TA168, TA165, TA10030, TA10035 | NC_002506 | 309750..435387 | 0.005 |