Detailed information of TA system TA294350

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): dhiT-phd/-
• Location: 901977..902381
• Replicon: chromosome
• Accession: NZ_LT992487
• Organism: Vibrio cholerae strain 4295STDY6534216

Toxin (Protein)

• Gene name: dhiT
• Uniprot ID: A0A086SLD6
• Locus tag: DG247_RS18370
• Protein ID: WP_001114075.1
• Coordinates: 901977..902246 (-)
• Length: 90 a.a.

Antitoxin (Protein)

• Gene name: phd
• Uniprot ID: -
• Locus tag: DG247_RS18375
• Protein ID: WP_099607150.1
• Coordinates: 902277..902381 (-)
• Length: 35 a.a.

Genomic Context

Location: 899694..899978 (285 bp)
Type: Others
Protein ID: WP_000381183.1

Location: 899975..900253 (279 bp)
Type: Others
Protein ID: WP_000578476.1

Location: 898388..898801 (414 bp)
Type: Others
Protein ID: WP_000049420.1

Location: 898985..899500 (516 bp)
Type: Others
Protein ID: WP_000343779.1

Location: 900392..900787 (396 bp)
Type: Others
Protein ID: WP_001000867.1

Location: 901038..901163 (126 bp)
Type: Others
Protein ID: WP_001905700.1

Location: 901462..901983 (522 bp)
Type: Others
Protein ID: WP_000921691.1

Location: 901977..902246 (270 bp)
Type: Toxin
Protein ID: WP_001114075.1

Location: 902277..902381 (105 bp)
Type: Antitoxin
Protein ID: WP_099607150.1

Location: 902438..903037 (600 bp)
Type: Others
Protein ID: WP_001891245.1

Location: 903187..904059 (873 bp)
Type: Others
Protein ID: WP_000254716.1

Location: 904234..904452 (219 bp)
Type: Others
Protein ID: WP_071908318.1

Location: 904516..904953 (438 bp)
Type: Others
Protein ID: WP_000503169.1

Location: 905072..905281 (210 bp)
Type: Others
Protein ID: Protein_767

Location: 905417..905806 (390 bp)
Type: Others
Protein ID: WP_001081302.1

Location: 905963..906880 (918 bp)
Type: Others
Protein ID: WP_000186333.1

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Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
DG247_RS18325	898388..898801	-	414	WP_000049420.1	VOC family protein	-
DG247_RS18335	898985..899500	-	516	WP_000343779.1	GNAT family N-acetyltransferase	-
DG247_RS18340	899694..899978	+	285	WP_000381183.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	-
DG247_RS18345	899975..900253	+	279	WP_000578476.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	-
DG247_RS18350	900392..900787	-	396	WP_001000867.1	hypothetical protein	-
DG247_RS18360	901038..901163	-	126	WP_001905700.1	DUF645 family protein	-
DG247_RS18365	901462..901983	-	522	WP_000921691.1	DUF2442 domain-containing protein	-
DG247_RS18370	901977..902246	-	270	WP_001114075.1	DUF4160 domain-containing protein	Toxin
DG247_RS18375	902277..902381	-	105	WP_099607150.1	acetyltransferase	Antitoxin
DG247_RS18380	902438..903037	-	600	WP_001891245.1	glutathione S-transferase N-terminal domain-containing protein	-
DG247_RS18385	903187..904059	-	873	WP_000254716.1	DUF3800 domain-containing protein	-
DG247_RS18390	904234..904452	-	219	WP_071908318.1	GNAT family N-acetyltransferase	-
DG247_RS18395	904516..904953	-	438	WP_000503169.1	IS200/IS605-like element IS1004 family transposase	-
DG247_RS18400	905072..905281	-	210	Protein_767	GNAT family N-acetyltransferase	-
DG247_RS18405	905417..905806	-	390	WP_001081302.1	hypothetical protein	-
DG247_RS18410	905963..906880	-	918	WP_000186333.1	alpha/beta hydrolase	-

Associated MGEs

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MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	catB9	-	897525..994497	96972
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002506 Vibrio cholerae O1 biovar El Tor str. N16961 Integron TA000164, TA000169, TA000166, TA000167, TA000179, TA000170, TA000171, TA000172, TA000173, TA000174, TA000175, TA000176, TA000177, TA000178, TA000168, TA000165, TA010030, TA010035 309750..435387 0.005	inside	Integron	catB9	-	897901..987709	89808
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002506 Vibrio cholerae O1 biovar El Tor str. N16961 IS/Tn TA000179, TA000177, TA000178, TA010035 428335..428772 0	flank	IS/Tn	-	-	904516..904953	437

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Protein of unknown function DUF4160 (9-74)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 90 a.a.
• Molecular weight: 10310.94 Da
• Isoelectric Point: 6.6303

>T294350 WP_001114075.1 NZ_LT992487:c902246-901977 [Vibrio cholerae]
MPEIDALLGLSFCLYFFDNKQHKLPHIHVKYGSYELIIAIETGECLEGYLPNKQRKRAENHILEHREQLMVMWNKAVNGE
NPGKLGDLC

Nucleotide

• Length: 270 bp

Antitoxin

Protein

• Length: 35 a.a.
• Molecular weight: 3991.79 Da
• Isoelectric Point: 9.2853

>AT294350 WP_099607150.1 NZ_LT992487:c902381-902277 [Vibrio cholerae]
VVSVVVFEFSSMRCQPLRRALYAYRNCLLKDTLL

Nucleotide

• Length: 105 bp

Similar Proteins

Only experimentally validated proteins are listed.

Toxin

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Protein	Organism	Identities (%)	Coverage (%)	Ha-value
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Antitoxin

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Protein	Organism	Identities (%)	Coverage (%)	Ha-value
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Structures

Toxin

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• AlphaFold DB: A0A086SLD6

Antitoxin

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Source	ID	Structure
No matching records found