MGE detailed information
MGE type: Integron MGE length: 89796 bp
Accession: NZ_CP040173 Location: 887669..977464 Organism: Vibrio cholerae strain VC1374 Replicon: chromosome
Accession: NZ_CP040173 Location: 887669..977464 Organism: Vibrio cholerae strain VC1374 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDZ90_RS18515 () | 883119..883790 | + | 672 | WP_000132861.1 | hypothetical protein | - |
| FDZ90_RS18520 () | 883915..884142 | + | 228 | WP_001911595.1 | hypothetical protein | - |
| FDZ90_RS18525 () | 884411..886339 | + | 1929 | WP_001121779.1 | threonine--tRNA ligase | - |
| FDZ90_RS18530 () | 886343..886894 | + | 552 | WP_001894072.1 | translation initiation factor IF-3 | - |
| FDZ90_RS18535 () | 886998..887192 | + | 195 | WP_001885060.1 | 50S ribosomal protein L35 | - |
| FDZ90_RS18540 () | 887234..887587 | + | 354 | WP_001138366.1 | 50S ribosomal protein L20 | - |
| FDZ90_RS18545 () | 887669..888631 | - | 963 | WP_000841995.1 | integron integrase IntIA | - |
| FDZ90_RS18550 () | 889111..889278 | + | 168 | WP_001883086.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS18555 () | 889307..889633 | + | 327 | WP_001921550.1 | hypothetical protein | - |
| FDZ90_RS18560 () | 889620..889766 | + | 147 | WP_071908332.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS18565 () | 890430..890612 | + | 183 | WP_000923182.1 | DUF645 family protein | - |
| FDZ90_RS18570 () | 890868..891119 | + | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| FDZ90_RS18575 () | 891092..891241 | + | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS18580 () | 891272..891703 | + | 432 | WP_000795498.1 | hypothetical protein | - |
| FDZ90_RS18585 () | 891854..892483 | + | 630 | WP_001009012.1 | type B-5 chloramphenicol O-acetyltransferase CatB9 | - |
| FDZ90_RS18590 () | 892639..893391 | + | 753 | WP_000116045.1 | SDR family oxidoreductase | - |
| FDZ90_RS18595 () | 893489..893668 | + | 180 | WP_001203705.1 | hypothetical protein | - |
| FDZ90_RS18600 () | 893693..893875 | + | 183 | WP_000923334.1 | DUF645 family protein | - |
| FDZ90_RS18605 () | 894080..894457 | + | 378 | WP_000411106.1 | hypothetical protein | - |
| FDZ90_RS18610 () | 894753..894935 | + | 183 | WP_000923340.1 | DUF645 family protein | - |
| FDZ90_RS18615 () | 895289..895471 | + | 183 | WP_000923153.1 | DUF645 family protein | - |
| FDZ90_RS18620 () | 895666..896343 | + | 678 | WP_000254617.1 | HNH endonuclease | - |
| FDZ90_RS18625 () | 896505..897713 | + | 1209 | WP_000272282.1 | deoxyguanosinetriphosphate triphosphohydrolase family protein | - |
| FDZ90_RS18630 () | 897875..898579 | + | 705 | WP_000087610.1 | HNH endonuclease | - |
| FDZ90_RS18635 () | 898737..899075 | + | 339 | WP_000713853.1 | hypothetical protein | - |
| FDZ90_RS18640 () | 899229..899546 | - | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS18645 () | 899565..899807 | - | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| FDZ90_RS18650 () | 900051..900437 | + | 387 | WP_001015867.1 | NUDIX hydrolase | - |
| FDZ90_RS18655 () | 900494..900607 | + | 114 | WP_001900214.1 | hypothetical protein | - |
| FDZ90_RS18660 () | 900556..900837 | + | 282 | WP_001894429.1 | DUF1289 domain-containing protein | - |
| FDZ90_RS18665 () | 901095..901631 | + | 537 | WP_000469482.1 | GNAT family N-acetyltransferase | - |
| FDZ90_RS18670 () | 901768..902283 | + | 516 | WP_001201509.1 | lipocalin family protein | - |
| FDZ90_RS18675 () | 902433..902930 | - | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin Detail |
| FDZ90_RS18680 () | 902927..903199 | - | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| FDZ90_RS18685 () | 903592..903717 | + | 126 | WP_001900195.1 | DUF645 family protein | - |
| FDZ90_RS18690 () | 903733..903771 | + | 39 | WP_106019118.1 | hypothetical protein | - |
| FDZ90_RS18695 () | 903966..904412 | + | 447 | WP_000006157.1 | hypothetical protein | - |
| FDZ90_RS18700 () | 904560..904829 | - | 270 | WP_000277238.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| FDZ90_RS18705 () | 904822..905100 | - | 279 | WP_001258569.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| FDZ90_RS18710 () | 905386..905664 | + | 279 | WP_001921601.1 | DUF3709 domain-containing protein | - |
| FDZ90_RS18715 () | 905916..906122 | + | 207 | Protein_796 | DUF3709 domain-containing protein | - |
| FDZ90_RS18720 () | 906322..906423 | + | 102 | WP_001921603.1 | hypothetical protein | - |
| FDZ90_RS18725 () | 906413..906799 | + | 387 | WP_000703163.1 | VOC family protein | - |
| FDZ90_RS18730 () | 906994..907245 | + | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| FDZ90_RS18735 () | 907218..907367 | + | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS18740 () | 907459..907701 | + | 243 | WP_000107461.1 | hypothetical protein | - |
| FDZ90_RS18745 () | 907953..908231 | + | 279 | WP_000280324.1 | DUF3709 domain-containing protein | - |
| FDZ90_RS18750 () | 908606..908749 | + | 144 | Protein_803 | DUF645 family protein | - |
| FDZ90_RS18755 () | 908803..908841 | + | 39 | WP_082798268.1 | hypothetical protein | - |
| FDZ90_RS18760 () | 909053..909520 | + | 468 | WP_001289288.1 | OsmC family protein | - |
| FDZ90_RS18765 () | 909648..910310 | + | 663 | WP_000960654.1 | hypothetical protein | - |
| FDZ90_RS18770 () | 910495..910761 | + | 267 | WP_000589156.1 | BrnT family toxin | Toxin Detail |
| FDZ90_RS18775 () | 910748..910993 | + | 246 | WP_000643598.1 | hypothetical protein | Antitoxin Detail |
| FDZ90_RS18780 () | 911089..911883 | + | 795 | WP_001911581.1 | hypothetical protein | - |
| FDZ90_RS18785 () | 911986..912114 | + | 129 | WP_071908338.1 | general secretion pathway protein GspI | - |
| FDZ90_RS18790 () | 912175..912357 | + | 183 | WP_000923182.1 | DUF645 family protein | - |
| FDZ90_RS18795 () | 912557..913030 | + | 474 | WP_001161076.1 | GrpB family protein | - |
| FDZ90_RS18800 () | 913027..913137 | + | 111 | WP_071908312.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS18805 () | 913179..913805 | + | 627 | WP_000365424.1 | LysE family translocator | - |
| FDZ90_RS18810 () | 913928..914626 | + | 699 | WP_001890502.1 | hypothetical protein | - |
| FDZ90_RS18815 () | 914630..914746 | + | 117 | WP_071908339.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS18820 () | 915324..915503 | + | 180 | WP_001883058.1 | DUF645 family protein | - |
| FDZ90_RS18825 () | 915717..916112 | + | 396 | WP_000870857.1 | DUF3465 domain-containing protein | - |
| FDZ90_RS18830 () | 916240..916539 | - | 300 | WP_000802136.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS18835 () | 916536..916778 | - | 243 | WP_001107719.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| FDZ90_RS18840 () | 917007..917585 | + | 579 | WP_000110120.1 | hypothetical protein | - |
| FDZ90_RS18845 () | 917589..917699 | + | 111 | WP_071908313.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS18850 () | 918123..918806 | + | 684 | WP_000877436.1 | hypothetical protein | - |
| FDZ90_RS18855 () | 919020..919286 | + | 267 | WP_000937852.1 | hypothetical protein | - |
| FDZ90_RS18860 () | 919441..920040 | + | 600 | WP_000429495.1 | hypothetical protein | - |
| FDZ90_RS18865 () | 920321..921256 | + | 936 | WP_000051985.1 | restriction endonuclease | - |
| FDZ90_RS18870 () | 921222..921362 | + | 141 | WP_001883049.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS18875 () | 921474..922496 | + | 1023 | WP_000954291.1 | hypothetical protein | - |
| FDZ90_RS18880 () | 922537..923043 | + | 507 | WP_001921103.1 | hypothetical protein | - |
| FDZ90_RS18885 () | 923104..923799 | - | 696 | WP_000213836.1 | hypothetical protein | - |
| FDZ90_RS18895 () | 925391..926398 | + | 1008 | WP_000093800.1 | DUF4365 domain-containing protein | - |
| FDZ90_RS18900 () | 926395..926505 | + | 111 | Protein_833 | DUF3265 domain-containing protein | - |
| FDZ90_RS18905 () | 926623..926901 | + | 279 | WP_000280319.1 | DUF3709 domain-containing protein | - |
| FDZ90_RS18910 () | 927189..927545 | + | 357 | WP_001094969.1 | hypothetical protein | - |
| FDZ90_RS18915 () | 927848..928029 | + | 182 | Protein_836 | DUF645 family protein | - |
| FDZ90_RS18920 () | 928206..928601 | + | 396 | WP_000046953.1 | hypothetical protein | - |
| FDZ90_RS18925 () | 928745..929281 | + | 537 | WP_000644491.1 | nucleotidyltransferase family protein | - |
| FDZ90_RS18930 () | 929578..929757 | + | 180 | WP_001883039.1 | DUF645 family protein | - |
| FDZ90_RS18935 () | 929953..930378 | + | 426 | WP_000403014.1 | GNAT family N-acetyltransferase | - |
| FDZ90_RS18940 () | 930527..930874 | + | 348 | WP_000933409.1 | hypothetical protein | - |
| FDZ90_RS18945 () | 931021..931314 | + | 294 | WP_125460920.1 | hypothetical protein | - |
| FDZ90_RS18950 () | 931670..931765 | + | 96 | WP_001907607.1 | DUF645 family protein | - |
| FDZ90_RS18955 () | 931959..932276 | - | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS18960 () | 932295..932537 | - | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| FDZ90_RS18965 () | 932779..933288 | + | 510 | WP_000405987.1 | GNAT family N-acetyltransferase | - |
| FDZ90_RS18970 () | 933345..933998 | + | 654 | WP_000226874.1 | hypothetical protein | - |
| FDZ90_RS18975 () | 934308..934526 | + | 219 | WP_001917086.1 | DUF3709 domain-containing protein | - |
| FDZ90_RS18980 () | 934929..935162 | + | 234 | WP_032482776.1 | DUF3709 domain-containing protein | - |
| FDZ90_RS18985 () | 935587..935767 | + | 181 | Protein_850 | DUF645 family protein | - |
| FDZ90_RS18990 () | 936034..936321 | + | 288 | WP_001162670.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS18995 () | 936332..936649 | + | 318 | WP_001232701.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| FDZ90_RS19000 () | 936646..936756 | + | 111 | WP_134814058.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS19005 () | 936933..937058 | + | 126 | WP_001944767.1 | DUF645 family protein | - |
| FDZ90_RS19010 () | 937074..937112 | + | 39 | WP_106019119.1 | hypothetical protein | - |
| FDZ90_RS19015 () | 937325..938329 | + | 1005 | WP_000964925.1 | LD-carboxypeptidase | - |
| FDZ90_RS19020 () | 938482..938928 | + | 447 | WP_000128977.1 | hypothetical protein | - |
| FDZ90_RS19025 () | 939048..939977 | + | 930 | WP_000335802.1 | hypothetical protein | - |
| FDZ90_RS19030 () | 939974..940084 | + | 111 | WP_071917832.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS19035 () | 940112..940588 | + | 477 | WP_001047180.1 | GNAT family N-acetyltransferase | - |
| FDZ90_RS19040 () | 940725..941240 | + | 516 | WP_001201528.1 | lipocalin family protein | - |
| FDZ90_RS19045 () | 941376..941666 | - | 291 | WP_000221352.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS19050 () | 941656..941904 | - | 249 | WP_000213183.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| FDZ90_RS19055 () | 942475..943128 | + | 654 | WP_000036957.1 | site-specific DNA-methyltransferase | - |
| FDZ90_RS19060 () | 943400..943825 | + | 426 | WP_000415748.1 | hypothetical protein | - |
| FDZ90_RS19065 () | 944033..944428 | + | 396 | WP_000649527.1 | DUF3465 domain-containing protein | - |
| FDZ90_RS19070 () | 944579..945109 | + | 531 | WP_000415563.1 | hypothetical protein | - |
| FDZ90_RS19075 () | 945247..945747 | + | 501 | WP_000789723.1 | hypothetical protein | - |
| FDZ90_RS19080 () | 945903..946301 | + | 399 | WP_001882293.1 | hypothetical protein | - |
| FDZ90_RS19085 () | 946401..946865 | - | 465 | WP_000140244.1 | hypothetical protein | - |
| FDZ90_RS19090 () | 947248..948233 | - | 986 | Protein_871 | sulfate ABC transporter substrate-binding protein | - |
| FDZ90_RS19095 () | 948484..949062 | + | 579 | WP_001020575.1 | DJ-1/PfpI family protein | - |
| FDZ90_RS19100 () | 949366..949536 | + | 171 | WP_001882300.1 | DUF645 family protein | - |
| FDZ90_RS19105 () | 949859..950473 | + | 615 | WP_000789575.1 | hypothetical protein | - |
| FDZ90_RS19110 () | 950620..951477 | + | 858 | WP_001279526.1 | DUF2806 domain-containing protein | - |
| FDZ90_RS19115 () | 951633..952184 | + | 552 | WP_000821930.1 | hypothetical protein | - |
| FDZ90_RS19120 () | 952471..952674 | + | 204 | WP_001911745.1 | hypothetical protein | - |
| FDZ90_RS19125 () | 952955..953128 | + | 174 | WP_001882305.1 | DUF3709 domain-containing protein | - |
| FDZ90_RS19130 () | 953488..953757 | + | 270 | WP_001198131.1 | hypothetical protein | - |
| FDZ90_RS19135 () | 954068..954154 | + | 87 | WP_134820423.1 | DUF645 family protein | - |
| FDZ90_RS19140 () | 954154..954246 | + | 93 | Protein_881 | DUF645 family protein | - |
| FDZ90_RS19145 () | 954455..954841 | + | 387 | WP_000703163.1 | VOC family protein | - |
| FDZ90_RS19150 () | 955043..955285 | + | 243 | WP_000107461.1 | hypothetical protein | - |
| FDZ90_RS19155 () | 955455..955832 | + | 378 | WP_000411109.1 | hypothetical protein | - |
| FDZ90_RS19160 () | 955889..956003 | + | 115 | Protein_885 | acetyltransferase | - |
| FDZ90_RS19165 () | 955952..956233 | + | 282 | WP_001894453.1 | DUF1289 domain-containing protein | - |
| FDZ90_RS19170 () | 956398..956511 | + | 114 | WP_001889158.1 | hypothetical protein | - |
| FDZ90_RS19175 () | 956460..956687 | + | 228 | WP_001894457.1 | DUF1289 domain-containing protein | - |
| FDZ90_RS19180 () | 957028..957360 | + | 333 | WP_000843587.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS19185 () | 957347..957661 | + | 315 | WP_000071008.1 | DNA-binding transcriptional regulator | Antitoxin Detail |
| FDZ90_RS19190 () | 957798..958232 | + | 435 | WP_000256036.1 | GNAT family N-acetyltransferase | - |
| FDZ90_RS19195 () | 958400..958555 | + | 156 | WP_000751734.1 | hypothetical protein | - |
| FDZ90_RS19200 () | 958680..959659 | - | 980 | Protein_893 | IS5-like element ISVch5 family transposase | - |
| FDZ90_RS19205 () | 959727..959999 | + | 273 | Protein_894 | CatB-related O-acetyltransferase | - |
| FDZ90_RS19210 () | 960170..960862 | + | 693 | WP_001047169.1 | GNAT family N-acetyltransferase | Antitoxin Detail |
| FDZ90_RS19215 () | 960862..961263 | + | 402 | WP_000351248.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| FDZ90_RS19220 () | 961233..961376 | + | 144 | WP_071908341.1 | DUF3265 domain-containing protein | - |
| FDZ90_RS19225 () | 961451..961864 | + | 414 | WP_000049417.1 | VOC family protein | - |
| FDZ90_RS19230 () | 962078..962329 | + | 252 | WP_001250179.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| FDZ90_RS19235 () | 962319..962606 | + | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS19240 () | 962734..963189 | + | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
| FDZ90_RS19245 () | 963511..963663 | + | 153 | WP_001884520.1 | DUF645 family protein | - |
| FDZ90_RS19250 () | 963865..964362 | - | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin Detail |
| FDZ90_RS19255 () | 964359..964631 | - | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| FDZ90_RS19260 () | 964862..965530 | + | 669 | WP_000043871.1 | hypothetical protein | - |
| FDZ90_RS19265 () | 965682..965969 | + | 288 | WP_000426470.1 | hypothetical protein | - |
| FDZ90_RS19270 () | 966110..966481 | + | 372 | WP_001164080.1 | nucleotide pyrophosphohydrolase | - |
| FDZ90_RS19275 () | 966548..966973 | + | 426 | WP_001882332.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| FDZ90_RS19280 () | 966970..967503 | + | 534 | WP_000118351.1 | GNAT family N-acetyltransferase | Toxin Detail |
| FDZ90_RS19285 () | 967705..967962 | + | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| FDZ90_RS19290 () | 967950..968252 | + | 303 | WP_000229317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS19295 () | 968486..969403 | + | 918 | WP_000186333.1 | alpha/beta hydrolase | - |
| FDZ90_RS19300 () | 969560..969949 | + | 390 | WP_001081302.1 | hypothetical protein | - |
| FDZ90_RS19305 () | 970085..970294 | + | 210 | Protein_914 | GNAT family N-acetyltransferase | - |
| FDZ90_RS19310 () | 970413..970850 | + | 438 | WP_000503169.1 | IS200/IS605-like element IS1004 family transposase | - |
| FDZ90_RS19315 () | 970913..971131 | + | 219 | WP_071908318.1 | GNAT family N-acetyltransferase | - |
| FDZ90_RS19320 () | 971306..972178 | + | 873 | WP_000254716.1 | DUF3800 domain-containing protein | - |
| FDZ90_RS19325 () | 972328..972927 | + | 600 | WP_001891245.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| FDZ90_RS19330 () | 972984..973088 | + | 105 | WP_099607150.1 | acetyltransferase | Antitoxin Detail |
| FDZ90_RS19335 () | 973119..973388 | + | 270 | WP_001114075.1 | DUF4160 domain-containing protein | Toxin Detail |
| FDZ90_RS19340 () | 973382..973903 | + | 522 | WP_000921691.1 | DUF2442 domain-containing protein | Antitoxin Detail |
| FDZ90_RS19345 () | 974202..974327 | + | 126 | WP_001905700.1 | DUF645 family protein | - |
| FDZ90_RS19350 () | 974578..974973 | + | 396 | WP_001000867.1 | hypothetical protein | - |
| FDZ90_RS19355 () | 975112..975390 | - | 279 | WP_000578476.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| FDZ90_RS19360 () | 975387..975671 | - | 285 | WP_000381183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| FDZ90_RS19365 () | 975865..976380 | + | 516 | WP_000343779.1 | GNAT family N-acetyltransferase | - |
| FDZ90_RS19370 () | 976564..976977 | + | 414 | WP_000049420.1 | VOC family protein | - |
| FDZ90_RS19375 () | 977532..978709 | + | 1178 | WP_086010879.1 | IS3-like element ISVch4 family transposase | - |
| FDZ90_RS19380 () | 979128..981905 | + | 2778 | WP_000509635.1 | alkaline phosphatase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Vibrio cholerae O1 biovar El Tor str. N16961 | Integron | TA164, TA169, TA166, TA167, TA179, TA170, TA171, TA172, TA173, TA174, TA175, TA176, TA177, TA178, TA168, TA165, TA10030, TA10035 | NC_002506 | 309750..435387 | 0.005 |