Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-Phd |
Location | 967705..968252 | Replicon | chromosome |
Accession | NZ_CP040173 | ||
Organism | Vibrio cholerae strain VC1374 |
Toxin (Protein)
Gene name | relE | Uniprot ID | Q9KM92 |
Locus tag | FDZ90_RS19290 | Protein ID | WP_000229317.1 |
Coordinates | 967950..968252 (+) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | Q9KM93 |
Locus tag | FDZ90_RS19285 | Protein ID | WP_000861987.1 |
Coordinates | 967705..967962 (+) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FDZ90_RS19240 | 962734..963189 | + | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
FDZ90_RS19245 | 963511..963663 | + | 153 | WP_001884520.1 | DUF645 family protein | - |
FDZ90_RS19250 | 963865..964362 | - | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | - |
FDZ90_RS19255 | 964359..964631 | - | 273 | WP_000246253.1 | DUF1778 domain-containing protein | - |
FDZ90_RS19260 | 964862..965530 | + | 669 | WP_000043871.1 | hypothetical protein | - |
FDZ90_RS19265 | 965682..965969 | + | 288 | WP_000426470.1 | hypothetical protein | - |
FDZ90_RS19270 | 966110..966481 | + | 372 | WP_001164080.1 | nucleotide pyrophosphohydrolase | - |
FDZ90_RS19275 | 966548..966973 | + | 426 | WP_001882332.1 | DUF1778 domain-containing protein | - |
FDZ90_RS19280 | 966970..967503 | + | 534 | WP_000118351.1 | GNAT family N-acetyltransferase | - |
FDZ90_RS19285 | 967705..967962 | + | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
FDZ90_RS19290 | 967950..968252 | + | 303 | WP_000229317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
FDZ90_RS19295 | 968486..969403 | + | 918 | WP_000186333.1 | alpha/beta hydrolase | - |
FDZ90_RS19300 | 969560..969949 | + | 390 | WP_001081302.1 | hypothetical protein | - |
FDZ90_RS19305 | 970085..970294 | + | 210 | Protein_914 | GNAT family N-acetyltransferase | - |
FDZ90_RS19310 | 970413..970850 | + | 438 | WP_000503169.1 | IS200/IS605-like element IS1004 family transposase | - |
FDZ90_RS19315 | 970913..971131 | + | 219 | WP_071908318.1 | GNAT family N-acetyltransferase | - |
FDZ90_RS19320 | 971306..972178 | + | 873 | WP_000254716.1 | DUF3800 domain-containing protein | - |
FDZ90_RS19325 | 972328..972927 | + | 600 | WP_001891245.1 | glutathione S-transferase N-terminal domain-containing protein | - |
FDZ90_RS19330 | 972984..973088 | + | 105 | WP_099607150.1 | acetyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | catB9 | - | 882589..977840 | 95251 | |
inside | Integron | catB9 | - | 887669..977464 | 89795 | ||
flank | IS/Tn | - | - | 970413..970850 | 437 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11726.68 Da Isoelectric Point: 5.1972
>T125049 WP_000229317.1 NZ_CP040173:967950-968252 [Vibrio cholerae]
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
Download Length: 303 bp
>T125049 NZ_CP040173:967950-968252 [Vibrio cholerae]
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
Antitoxin
Download Length: 86 a.a. Molecular weight: 9647.15 Da Isoelectric Point: 7.3178
>AT125049 WP_000861987.1 NZ_CP040173:967705-967962 [Vibrio cholerae]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
Download Length: 258 bp
>AT125049 NZ_CP040173:967705-967962 [Vibrio cholerae]
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | Q9KM92 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1T4SLM9 |