Vibrio parahaemolyticus RIMD 2210633



NC_004603 (chromosome 1)
 

NC_004605 (chromosome 2)
 

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
JSONXMLCSVTXTSQLMS-Excel
Loading, please wait
T6SS ID
Type
Organism
Replicon (Accession)
Location
Function
T6SS00043 experimentali1Vibrio parahaemolyticus RIMD 2210633chromosome I (NC_004603)1486402..1526996anti-eukaryotic; anti-bacterial; effector translocation; adherence; virulence
T6SS00044 experimentali5Vibrio parahaemolyticus RIMD 2210633chromosome II (NC_004605)1074208..1108114anti-eukaryotic; effector translocation; adherence
Showing 1 to 2 of 2 rows

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
JSONXMLCSVTXTSQLMS-Excel
Loading, please wait
Regulator ID
Locus tag (Gene)
Related T6SS
Regulator type
Regulatory pathway
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
Target (Regulation)
REG0100 experimentalVP_RS12495 (barA)T6SS00043 experimental; T6SS00044 experimentalproteinTCS-HKVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)2712492..2715290 (+)491625032Hcp expression and secretion (↓)
REG0101 experimentalVP_RS09470 (UvrY)T6SS00043 experimental; T6SS00044 experimentalproteinTCS-RRVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)2037468..2038112 (-)491529158CsrB (↓)
REG0102 experimentalVP_RS12395 (CsrA)T6SS00043 experimental; T6SS00044 experimentalproteincarbon storage regulatory pathwayVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)2688313..2688510 (-)490550575Hcp and vgrG expression and secretion (↓)
REG0103 experimentalCsrB1T6SS00043 experimental; T6SS00044 experimentalncRNAcarbon storage regulatory pathwayVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)2438728..2439035 (+)-VP_RS12395 (CsrA) (↑)
REG0104 experimentalCsrB2T6SS00043 experimental; T6SS00044 experimentalncRNAcarbon storage regulatory pathwayVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)3215766..3216162 (-)-VP_RS12395 (CsrA) (↑)
REG0106 experimentalvp2049 (Thymidylate kinase, Tmk)T6SS00043 experimentalproteinUnknownVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)2150113..2150745 (-)28898823T6SS1 (VgrG1) expression and secretion (↓)
REG0107 experimentalVP1028 (TfoY)T6SS00043 experimentalproteinc-di-GMP regulatory pathwayVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)1077946..1078536 (-)28897802T6SS1 (VgrG1) expression and secretion (↓)
REG0108 experimentalvp1391T6SS00043 experimentalproteinGlobal regulatorVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)1491226..1492857 (-)28898165T6SS1 (VgrG1) expression and secretion (↓)
REG0109 experimentalvp1407T6SS00043 experimentalproteinUnknownVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)1511565..1512017 (-)28898181T6SS1 (VgrG1) expression and secretion (↓)
REG0110 experimentalVP1133 (hns)T6SS00043 experimentalproteinGlobal regulatorVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)1189718..1190125 (-)28897907VP1028 (TfoY) (↑)
Showing 1 to 10 of 19 rows
1025
 rows per page

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
JSONXMLCSVTXTSQLMS-Excel
Loading, please wait
Effector ID
Locus tag (Gene)
Classification
Cognate immunity protein
Related T6SS
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
EFF01294 experimentalVP_RS06875TdeIMU00052 experimentalT6SS00043 experimentalVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)1522167..1524323 (+)28898189
EFF01293 experimentalVP_RS06745TseIMU00051 experimentalT6SS00043 experimentalVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)1483454..1485205 (+)28898162
EFF00060 experimentalVP_RS06770--T6SS00043 experimentalVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)1495971..1496489 (+)28898167
EFF01295 experimentalVP_RS21220Tde-T6SS00043 experimentalVibrio parahaemolyticus RIMD 2210633chromosome (NC_004605)1341875..1344451 (+)28901118
EFF00061 experimentalVP_RS20100--T6SS00044 experimentalVibrio parahaemolyticus RIMD 2210633chromosome (NC_004605)1081544..1082023 (-)28900882
Showing 1 to 5 of 5 rows

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
JSONXMLCSVTXTSQLMS-Excel
Loading, please wait
Immunity protein ID
Locus tag (Gene)
Related T6SS
Organism                
Replicon (Accession)
Coordinates (Strand)
Protein GI
Cognate effector
IMU00051 experimentalVP_RS06750T6SS00043 experimentalVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)1485278..1486405 (+)28898163EFF00060 experimental
IMU00052 experimentalVP_RS06880T6SS00043 experimentalVibrio parahaemolyticus RIMD 2210633chromosome (NC_004603)1524323..1524916 (+)28898190EFF00060 experimental
IMU00275 experimentalVti2T6SS00043 experimentalVibrio parahaemolyticus RIMD 2210633chromosome (NC_004605)-EFF00061 insolico
Showing 1 to 3 of 3 rows

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
JSONXMLCSVTXTSQLMS-Excel
Loading, please wait
ID          
Locus tag (Gene)
Organism                
Replicon (Accession)
Coordinates (Strand)
Protein GI
Response to T6SS attack
Known or putative function
No matching records found

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
JSONXMLCSVTXTSQLMS-Excel
Loading, please wait
Accessory protein ID
Locus tag (Gene)
Related T6SS
Type            
Organism                
Replicon (Accession)
Coordinates (Strand)
Protein GI
Related structure protein
Related effector
No matching records found