Detailed information of regulator
Summary
| Regulator ID | REG0110  |
| Regulator type | protein |
| Regulatory pathway (from literatures) | Global regulator |
| KEGG pathway (determined by BlastKOALA) | - |
| Related T6SS | T6SS00043 (Type i1) |
| Strain | Vibrio parahaemolyticus RIMD 2210633 |
| Replicon | chromosome |
| Sequence | Protein sequence (136 a.a.); Nucleotide sequence (408 bp) |
| Description | - |
| Reference |
External database links
| Locus tag (Gene) | VP1133 (hns) |
| Coordinates (Strand) | 1189718..1190125 (-) |
| NCBI ID | 28897907 |
| RefSeq | NC_004603 |
| Uniprot ID | Q87QL6_VIBPA |
| KEGG ID | vpa:VP1133 |
| KEGG pathway (determined by BlastKOALA) | - |
| PDB ID | - |
Target
| Target | Regulation (↓/↑) | Target sequence |
|---|---|---|
| VP1028 (TfoY) | ↑ | 28897802 |
Pfam domain hit(s) of regulator
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Histone_HNS | PF00816.23 | 3.5e-19 | 33..129 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-135 | MSELTKTLLNIRSLRAFSRELTLEQLEEALDKLTTVVEERREAEEAEREALAQQEAKLAEIAEKIAQDGIDVEALISALSGETKTKAKSKRAPRPAKYKYIDTNGQEKTWTGQGRTPSAIQEQLDAGKSLDDFLI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9962 | - | - |
Protein sequence of regulator: 136 a.a. .
>REG0110 NC_004603:c1190125-1189718 [Vibrio parahaemolyticus RIMD 2210633]
MSELTKTLLNIRSLRAFSRELTLEQLEEALDKLTTVVEERREAEEAEREALAQQEAKLAEIAEKIAQDGIDVEALISALS
GETKTKAKSKRAPRPAKYKYIDTNGQEKTWTGQGRTPSAIQEQLDAGKSLDDFLI*
MSELTKTLLNIRSLRAFSRELTLEQLEEALDKLTTVVEERREAEEAEREALAQQEAKLAEIAEKIAQDGIDVEALISALS
GETKTKAKSKRAPRPAKYKYIDTNGQEKTWTGQGRTPSAIQEQLDAGKSLDDFLI*
Nucleotide sequence of regulator: 408 bp .
>REG0110 NC_004603:c1190125-1189718 [Vibrio parahaemolyticus RIMD 2210633]
ATGTCAGAGCTGACTAAAACACTTCTAAATATCCGTAGCCTTCGTGCATTTTCTCGTGAGCTGACTCTAGAACAATTGGA
AGAAGCTCTAGATAAACTAACTACTGTTGTTGAAGAGCGTCGTGAAGCTGAAGAAGCAGAGCGTGAAGCACTAGCACAAC
AAGAAGCTAAGCTAGCAGAGATTGCAGAAAAAATTGCTCAAGACGGTATCGACGTTGAAGCACTAATTAGCGCACTATCT
GGCGAAACTAAGACTAAAGCAAAATCTAAGCGCGCTCCTCGCCCAGCTAAGTACAAGTACATCGACACAAATGGCCAAGA
AAAAACTTGGACAGGCCAAGGTCGTACACCTTCTGCAATTCAAGAGCAACTTGACGCAGGTAAATCACTAGACGATTTCC
TAATCTAA
ATGTCAGAGCTGACTAAAACACTTCTAAATATCCGTAGCCTTCGTGCATTTTCTCGTGAGCTGACTCTAGAACAATTGGA
AGAAGCTCTAGATAAACTAACTACTGTTGTTGAAGAGCGTCGTGAAGCTGAAGAAGCAGAGCGTGAAGCACTAGCACAAC
AAGAAGCTAAGCTAGCAGAGATTGCAGAAAAAATTGCTCAAGACGGTATCGACGTTGAAGCACTAATTAGCGCACTATCT
GGCGAAACTAAGACTAAAGCAAAATCTAAGCGCGCTCCTCGCCCAGCTAAGTACAAGTACATCGACACAAATGGCCAAGA
AAAAACTTGGACAGGCCAAGGTCGTACACCTTCTGCAATTCAAGAGCAACTTGACGCAGGTAAATCACTAGACGATTTCC
TAATCTAA