Detailed information of immunity protein


Summary

Immunity protein ID IMU00052 experimental
Cognate effector EFF01294 experimental
Related T6SS (Type) T6SS00043 experimental (Type i1)
Strain Vibrio parahaemolyticus RIMD 2210633
Replicon chromosome
Sequence Protein sequence (198 a.a.); Nucleotide sequence (594 bp)
Description VP1416
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) VP_RS06880
Coordinates (Strand) 1524323..1524916 (+)
NCBI ID 28898190
RefSeq NC_004603
Uniprot ID Q87PT5_VIBPA
KEGG ID vpa:VP1416
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
No matching records found
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-197MISDINEEYYVLVCGSGKVPSPYVSCSKSHYLIFQEPMSLKMPIRIESAAEAQEKVPLIEAMAAPSDPVLSGRITQVLNYFDLYKVQLLPAIYTHNDDSEHSYSVLVVDNDIDAYDFDNGLYIDRLDDGEVGNPRNCRLDPEKLSKIPLEKRYIFKIRGMMDYLVHKTIAESLVALNASGLHLVPVLEWDIGFGMKI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9647--


  Protein sequence: 198 a.a.    .

>IMU00052 NC_004603:1524323-1524916 [Vibrio parahaemolyticus RIMD 2210633]
MISDINEEYYVLVCGSGKVPSPYVSCSKSHYLIFQEPMSLKMPIRIESAAEAQEKVPLIEAMAAPSDPVLSGRITQVLNY
FDLYKVQLLPAIYTHNDDSEHSYSVLVVDNDIDAYDFDNGLYIDRLDDGEVGNPRNCRLDPEKLSKIPLEKRYIFKIRGM
MDYLVHKTIAESLVALNASGLHLVPVLEWDIGFGMKI*

  Nucleotide sequence: 594 bp    .

>IMU00052 NC_004603:1524323-1524916 [Vibrio parahaemolyticus RIMD 2210633]
ATGATTTCAGATATTAATGAAGAGTATTATGTACTTGTGTGTGGGTCTGGTAAAGTACCTTCTCCTTATGTTTCTTGTAG
TAAAAGCCACTATTTGATTTTCCAAGAACCTATGTCACTTAAAATGCCAATCCGGATAGAGTCAGCAGCTGAAGCCCAAG
AGAAAGTTCCATTAATCGAAGCTATGGCTGCCCCGAGTGATCCTGTACTTTCAGGTAGAATAACACAAGTCCTCAACTAC
TTTGATCTTTATAAAGTTCAATTGCTCCCAGCTATATATACCCATAATGATGATAGCGAGCACTCTTATTCAGTCTTAGT
TGTTGATAACGATATTGATGCTTACGATTTTGATAACGGCCTATATATTGATCGTTTGGATGATGGTGAGGTTGGAAACC
CAAGAAACTGTCGACTTGACCCCGAAAAACTTTCAAAAATCCCGTTAGAAAAACGTTATATTTTTAAAATACGGGGCATG
ATGGATTATTTAGTCCACAAAACAATTGCCGAATCTCTAGTCGCATTGAATGCAAGTGGACTTCACTTAGTTCCAGTATT
GGAATGGGACATTGGTTTTGGAATGAAAATTTAA