Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00052  |
| Cognate effector | EFF01294 |
| Related T6SS (Type) | T6SS00043 (Type i1) |
| Strain | Vibrio parahaemolyticus RIMD 2210633 |
| Replicon | chromosome |
| Sequence | Protein sequence (198 a.a.); Nucleotide sequence (594 bp) |
| Description | VP1416 |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | VP_RS06880 |
| Coordinates (Strand) | 1524323..1524916 (+) |
| NCBI ID | 28898190 |
| RefSeq | NC_004603 |
| Uniprot ID | Q87PT5_VIBPA |
| KEGG ID | vpa:VP1416 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-197 | MISDINEEYYVLVCGSGKVPSPYVSCSKSHYLIFQEPMSLKMPIRIESAAEAQEKVPLIEAMAAPSDPVLSGRITQVLNYFDLYKVQLLPAIYTHNDDSEHSYSVLVVDNDIDAYDFDNGLYIDRLDDGEVGNPRNCRLDPEKLSKIPLEKRYIFKIRGMMDYLVHKTIAESLVALNASGLHLVPVLEWDIGFGMKI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9647 | - | - |
Protein sequence: 198 a.a. .
>IMU00052 NC_004603:1524323-1524916 [Vibrio parahaemolyticus RIMD 2210633]
MISDINEEYYVLVCGSGKVPSPYVSCSKSHYLIFQEPMSLKMPIRIESAAEAQEKVPLIEAMAAPSDPVLSGRITQVLNY
FDLYKVQLLPAIYTHNDDSEHSYSVLVVDNDIDAYDFDNGLYIDRLDDGEVGNPRNCRLDPEKLSKIPLEKRYIFKIRGM
MDYLVHKTIAESLVALNASGLHLVPVLEWDIGFGMKI*
MISDINEEYYVLVCGSGKVPSPYVSCSKSHYLIFQEPMSLKMPIRIESAAEAQEKVPLIEAMAAPSDPVLSGRITQVLNY
FDLYKVQLLPAIYTHNDDSEHSYSVLVVDNDIDAYDFDNGLYIDRLDDGEVGNPRNCRLDPEKLSKIPLEKRYIFKIRGM
MDYLVHKTIAESLVALNASGLHLVPVLEWDIGFGMKI*
Nucleotide sequence: 594 bp .
>IMU00052 NC_004603:1524323-1524916 [Vibrio parahaemolyticus RIMD 2210633]
ATGATTTCAGATATTAATGAAGAGTATTATGTACTTGTGTGTGGGTCTGGTAAAGTACCTTCTCCTTATGTTTCTTGTAG
TAAAAGCCACTATTTGATTTTCCAAGAACCTATGTCACTTAAAATGCCAATCCGGATAGAGTCAGCAGCTGAAGCCCAAG
AGAAAGTTCCATTAATCGAAGCTATGGCTGCCCCGAGTGATCCTGTACTTTCAGGTAGAATAACACAAGTCCTCAACTAC
TTTGATCTTTATAAAGTTCAATTGCTCCCAGCTATATATACCCATAATGATGATAGCGAGCACTCTTATTCAGTCTTAGT
TGTTGATAACGATATTGATGCTTACGATTTTGATAACGGCCTATATATTGATCGTTTGGATGATGGTGAGGTTGGAAACC
CAAGAAACTGTCGACTTGACCCCGAAAAACTTTCAAAAATCCCGTTAGAAAAACGTTATATTTTTAAAATACGGGGCATG
ATGGATTATTTAGTCCACAAAACAATTGCCGAATCTCTAGTCGCATTGAATGCAAGTGGACTTCACTTAGTTCCAGTATT
GGAATGGGACATTGGTTTTGGAATGAAAATTTAA
ATGATTTCAGATATTAATGAAGAGTATTATGTACTTGTGTGTGGGTCTGGTAAAGTACCTTCTCCTTATGTTTCTTGTAG
TAAAAGCCACTATTTGATTTTCCAAGAACCTATGTCACTTAAAATGCCAATCCGGATAGAGTCAGCAGCTGAAGCCCAAG
AGAAAGTTCCATTAATCGAAGCTATGGCTGCCCCGAGTGATCCTGTACTTTCAGGTAGAATAACACAAGTCCTCAACTAC
TTTGATCTTTATAAAGTTCAATTGCTCCCAGCTATATATACCCATAATGATGATAGCGAGCACTCTTATTCAGTCTTAGT
TGTTGATAACGATATTGATGCTTACGATTTTGATAACGGCCTATATATTGATCGTTTGGATGATGGTGAGGTTGGAAACC
CAAGAAACTGTCGACTTGACCCCGAAAAACTTTCAAAAATCCCGTTAGAAAAACGTTATATTTTTAAAATACGGGGCATG
ATGGATTATTTAGTCCACAAAACAATTGCCGAATCTCTAGTCGCATTGAATGCAAGTGGACTTCACTTAGTTCCAGTATT
GGAATGGGACATTGGTTTTGGAATGAAAATTTAA