Detailed information NTG0988540

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AAG685_RS23515
• Genome accession: NZ_CP152345
• Coordinates: 5149855..5150040 (-)
• Length: 61 a.a.
• NCBI ID: WP_406665185.1
• Uniprot ID: -
• Organism: Pseudomonas indoloxydans strain SDU_PSEU1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5144855..5155040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG685_RS23485	nadC	5145762..5146610 (+)	849	WP_406665173.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AAG685_RS23490	-	5146737..5147648 (-)	912	WP_406665175.1	ABC transporter ATP-binding protein	-
AAG685_RS23495	-	5147645..5148493 (-)	849	WP_406665177.1	hypothetical protein	-
AAG685_RS23500	-	5148490..5148702 (-)	213	WP_406665179.1	hypothetical protein	-
AAG685_RS23505	-	5148710..5149306 (-)	597	WP_406665181.1	ABC transporter permease	-
AAG685_RS23510	-	5149415..5149849 (-)	435	WP_406665183.1	hypothetical protein	-
AAG685_RS23515	pilA	5149855..5150040 (-)	186	WP_406665185.1	type IV pilin protein	Machinery gene
AAG685_RS23520	pilB	5150269..5151969 (+)	1701	WP_406665187.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAG685_RS23525	pilC	5151973..5153193 (+)	1221	WP_406665189.1	type II secretion system F family protein	Machinery gene
AAG685_RS23530	pilD	5153198..5154064 (+)	867	WP_406665191.1	prepilin peptidase	Machinery gene
AAG685_RS23535	coaE	5154266..5154874 (+)	609	WP_406665193.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 61 a.a.
• Molecular weight: 6649.91 Da
• Isoelectric Point: 10.2806

>NTDB_id=988540 AAG685_RS23515 WP_406665185.1 5149855..5150040(-) (pilA) [Pseudomonas indoloxydans strain SDU_PSEU1]
MKSLKKQKGFTLIELMIVVAIIGILAAIAIPQFNEYRAKTNDSTAQADAKNVLTVMTVAQQ

Nucleotide

• Length: 186 bp

>NTDB_id=988540 AAG685_RS23515 WP_406665185.1 5149855..5150040(-) (pilA) [Pseudomonas indoloxydans strain SDU_PSEU1]
ATGAAGTCTCTGAAGAAGCAAAAGGGTTTCACCCTGATCGAACTGATGATCGTCGTTGCGATCATCGGCATCCTGGCAGC
CATCGCCATTCCGCAGTTCAACGAGTATCGCGCCAAGACGAATGACTCCACTGCGCAGGCTGACGCCAAAAACGTGCTCA
CCGTAATGACCGTGGCTCAGCAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Ralstonia pseudosolanacearum GMI1000	60.714	91.803	0.557
pilA	Pseudomonas aeruginosa PAK	70.455	72.131	0.508
pilA	Acinetobacter nosocomialis M2	71.429	68.852	0.492
pilV	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.604	86.885	0.492
pilA2	Legionella pneumophila str. Paris	65.217	75.41	0.492
pilA2	Legionella pneumophila strain ERS1305867	65.217	75.41	0.492
pilA	Acinetobacter baumannii strain A118	78.378	60.656	0.475
pilA/pilAI	Pseudomonas stutzeri DSM 10701	66.667	68.852	0.459
pilA/pilA1	Eikenella corrodens VA1	75.676	60.656	0.459
pilA	Vibrio parahaemolyticus RIMD 2210633	56	81.967	0.459
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	62.222	73.77	0.459
pilA	Vibrio campbellii strain DS40M4	77.143	57.377	0.443
pilA	Vibrio cholerae C6706	75	59.016	0.443
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	75	59.016	0.443
pilA	Vibrio cholerae strain A1552	75	59.016	0.443
pilA/pilAII	Pseudomonas stutzeri DSM 10701	55.102	80.328	0.443
comF	Acinetobacter baylyi ADP1	57.778	73.77	0.426
pilA/pilA1	Synechocystis sp. PCC 6803	43.86	93.443	0.41
pilE	Neisseria gonorrhoeae strain FA1090	64.103	63.934	0.41
pilE	Neisseria gonorrhoeae MS11	64.103	63.934	0.41
pilE	Acinetobacter baumannii D1279779	52.174	75.41	0.393
comE	Acinetobacter baylyi ADP1	54.545	72.131	0.393
pilA	Haemophilus influenzae 86-028NP	69.697	54.098	0.377
pilA	Haemophilus influenzae Rd KW20	69.697	54.098	0.377
pilL	Neisseria gonorrhoeae MS11	60.526	62.295	0.377
pilA	Glaesserella parasuis strain SC1401	68.75	52.459	0.361
pilA/pilA4	Thermus thermophilus HB27	55	65.574	0.361
pilE	Legionella pneumophila strain ERS1305867	41.509	86.885	0.361
pilE	Legionella pneumophila str. Paris	41.509	86.885	0.361