Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAG685_RS23530 | Genome accession | NZ_CP152345 |
| Coordinates | 5153198..5154064 (+) | Length | 288 a.a. |
| NCBI ID | WP_406665191.1 | Uniprot ID | - |
| Organism | Pseudomonas indoloxydans strain SDU_PSEU1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5148198..5159064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAG685_RS23500 | - | 5148490..5148702 (-) | 213 | WP_406665179.1 | hypothetical protein | - |
| AAG685_RS23505 | - | 5148710..5149306 (-) | 597 | WP_406665181.1 | ABC transporter permease | - |
| AAG685_RS23510 | - | 5149415..5149849 (-) | 435 | WP_406665183.1 | hypothetical protein | - |
| AAG685_RS23515 | pilA | 5149855..5150040 (-) | 186 | WP_406665185.1 | type IV pilin protein | Machinery gene |
| AAG685_RS23520 | pilB | 5150269..5151969 (+) | 1701 | WP_406665187.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAG685_RS23525 | pilC | 5151973..5153193 (+) | 1221 | WP_406665189.1 | type II secretion system F family protein | Machinery gene |
| AAG685_RS23530 | pilD | 5153198..5154064 (+) | 867 | WP_406665191.1 | prepilin peptidase | Machinery gene |
| AAG685_RS23535 | coaE | 5154266..5154874 (+) | 609 | WP_406665193.1 | dephospho-CoA kinase | - |
| AAG685_RS23540 | yacG | 5154871..5155065 (+) | 195 | WP_406665195.1 | DNA gyrase inhibitor YacG | - |
| AAG685_RS23545 | - | 5155154..5155369 (-) | 216 | WP_406665197.1 | hypothetical protein | - |
| AAG685_RS23550 | - | 5155474..5156163 (-) | 690 | WP_406665199.1 | energy-coupling factor ABC transporter permease | - |
| AAG685_RS23555 | - | 5156392..5157021 (+) | 630 | WP_406665201.1 | DUF1780 domain-containing protein | - |
| AAG685_RS23560 | - | 5157018..5157566 (+) | 549 | WP_406665203.1 | MOSC domain-containing protein | - |
| AAG685_RS23565 | - | 5157591..5157764 (+) | 174 | WP_406665205.1 | DUF3094 domain-containing protein | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31756.72 Da Isoelectric Point: 6.0739
>NTDB_id=988543 AAG685_RS23530 WP_406665191.1 5153198..5154064(+) (pilD) [Pseudomonas indoloxydans strain SDU_PSEU1]
MVFDFMADNLSAFVFLCVIFGLLIGSFLNVVVYRLPLMLQRDWQSQAREVLELPPAPPAETFNLLLPNSSCPCCGHEIRP
WENVPVVSYLLLRGKCSSCKMPISKRYPLVELACGVLSGYVAWHFGFTWQAGAILVLSWGLLAMSLIDADHQILPDALVL
PLLWLGLIVNHFGLFTSLEDALWGTIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVGA
VLGVIILRLRGSDTSTPIPFGPYLAIAGWIALLWGDVITGNYLKFAGF
MVFDFMADNLSAFVFLCVIFGLLIGSFLNVVVYRLPLMLQRDWQSQAREVLELPPAPPAETFNLLLPNSSCPCCGHEIRP
WENVPVVSYLLLRGKCSSCKMPISKRYPLVELACGVLSGYVAWHFGFTWQAGAILVLSWGLLAMSLIDADHQILPDALVL
PLLWLGLIVNHFGLFTSLEDALWGTIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVGA
VLGVIILRLRGSDTSTPIPFGPYLAIAGWIALLWGDVITGNYLKFAGF
Nucleotide
Download Length: 867 bp
>NTDB_id=988543 AAG685_RS23530 WP_406665191.1 5153198..5154064(+) (pilD) [Pseudomonas indoloxydans strain SDU_PSEU1]
ATGGTGTTCGATTTTATGGCCGACAACCTGTCGGCCTTCGTTTTTCTCTGCGTCATCTTTGGCTTGCTGATCGGCAGCTT
CCTCAACGTGGTGGTCTATCGCCTGCCATTGATGCTGCAGCGTGACTGGCAGAGCCAGGCCCGTGAGGTGCTGGAGTTGC
CGCCCGCACCACCGGCAGAAACCTTCAACCTGCTGCTGCCCAACTCCTCGTGCCCATGCTGCGGCCATGAGATTCGTCCC
TGGGAAAACGTTCCGGTCGTCAGCTACCTGCTCCTGCGCGGCAAGTGTTCGAGCTGCAAGATGCCGATCAGCAAACGCTA
CCCCCTGGTGGAACTGGCCTGCGGCGTGCTTTCCGGCTACGTTGCCTGGCACTTCGGCTTCACCTGGCAGGCCGGTGCGA
TACTGGTGCTGAGCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGATCCTGCCGGACGCACTGGTGCTG
CCATTGTTGTGGCTGGGCCTGATCGTCAACCACTTCGGCCTGTTCACCAGCCTGGAAGATGCTCTGTGGGGAACAATTGC
CGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGTTGCTGGCCATGCTTGGCGCCTGGGGGGGCTGGCAGGTTCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTCGGCGCC
GTGCTTGGGGTGATTATTCTGCGCCTGCGCGGCAGCGACACCAGCACGCCCATCCCCTTTGGCCCCTACCTGGCCATCGC
CGGCTGGATCGCCCTGCTGTGGGGCGACGTGATTACCGGCAACTACCTGAAGTTCGCCGGGTTCTGA
ATGGTGTTCGATTTTATGGCCGACAACCTGTCGGCCTTCGTTTTTCTCTGCGTCATCTTTGGCTTGCTGATCGGCAGCTT
CCTCAACGTGGTGGTCTATCGCCTGCCATTGATGCTGCAGCGTGACTGGCAGAGCCAGGCCCGTGAGGTGCTGGAGTTGC
CGCCCGCACCACCGGCAGAAACCTTCAACCTGCTGCTGCCCAACTCCTCGTGCCCATGCTGCGGCCATGAGATTCGTCCC
TGGGAAAACGTTCCGGTCGTCAGCTACCTGCTCCTGCGCGGCAAGTGTTCGAGCTGCAAGATGCCGATCAGCAAACGCTA
CCCCCTGGTGGAACTGGCCTGCGGCGTGCTTTCCGGCTACGTTGCCTGGCACTTCGGCTTCACCTGGCAGGCCGGTGCGA
TACTGGTGCTGAGCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGATCCTGCCGGACGCACTGGTGCTG
CCATTGTTGTGGCTGGGCCTGATCGTCAACCACTTCGGCCTGTTCACCAGCCTGGAAGATGCTCTGTGGGGAACAATTGC
CGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGTTGCTGGCCATGCTTGGCGCCTGGGGGGGCTGGCAGGTTCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTCGGCGCC
GTGCTTGGGGTGATTATTCTGCGCCTGCGCGGCAGCGACACCAGCACGCCCATCCCCTTTGGCCCCTACCTGGCCATCGC
CGGCTGGATCGCCCTGCTGTGGGGCGACGTGATTACCGGCAACTACCTGAAGTTCGCCGGGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.65 |
95.139 |
0.51 |
| pilD | Vibrio campbellii strain DS40M4 |
53.48 |
94.792 |
0.507 |
| pilD | Acinetobacter baumannii D1279779 |
51.408 |
98.611 |
0.507 |
| pilD | Acinetobacter nosocomialis M2 |
51.056 |
98.611 |
0.503 |
| pilD | Neisseria gonorrhoeae MS11 |
50 |
91.667 |
0.458 |