Statistics

Taxonomic distribution

The tables and piecharts display the taxonomic distribution of experimentally verified natural transformation-associated genes, enumerating validated gene counts per taxon. Clicking on a specific taxon (e.g., Streptococcus pneumoniae) provides access to strain list and gene information.

Species  51 Genus  30 Family  23 Order  20 Class  11 Phylum  7 Kingdom  4 Domain  2

Species

Total gene count 1072

Streptococcus pneumoniae

203

Bacillus subtilis

85

Streptococcus mutans

63

Streptococcus mitis

57

Vibrio cholerae

48

Legionella pneumophila

43

Acinetobacter baumannii

43

Neisseria gonorrhoeae

38

Haemophilus influenzae

36

Staphylococcus aureus

34

Streptococcus thermophilus

31

Campylobacter jejuni

26

Acinetobacter baylyi

25

Streptococcus gordonii

22

Riemerella anatipestifer

22

Helicobacter pylori

22

Neisseria meningitidis

21

Streptococcus pyogenes

20

Lactococcus cremoris

19

Streptococcus salivarius

17

Glaesserella parasuis

16

Vibrio campbellii

16

Deinococcus radiodurans

16

Thermus thermophilus

15

Latilactobacillus sakei

15

Synechocystis sp. PCC 6803

13

Methanococcus maripaludis

13

Vibrio parahaemolyticus

12

Streptococcus suis

12

Stutzerimonas stutzeri

9

Lactococcus lactis

8

Pseudomonas aeruginosa

7

Streptococcus sobrinus

6

Streptococcus equinus

6

Acinetobacter nosocomialis

6

Ralstonia pseudosolanacearum

4

Methanoculleus thermophilus

4

Streptococcus infantarius

3

Aliivibrio fischeri

3

Kingella kingae

2

Escherichia coli

1

Streptococcus sinensis

1

Neisseria elongata

1

Eikenella corrodens

1

Porphyromonas gingivalis

1

Streptococcus infantis

1

Actinobacillus suis

1

Neisseria subflava

1

Xylella fastidiosa

1

Actinobacillus pleuropneumoniae

1

Thermococcus kodakarensis

1

Genus

Total gene count 1072

Family

Total gene count 1072

Order

Total gene count 1072

Class

Total gene count 1072

Phylum

Total gene count 1072

Kingdom

Total gene count 1072

Domain

Total gene count 1072

Bacteria

1054

Archaea

18

The tables and piecharts display the taxonomic distribution of in silico predicted natural transformation machinery and regulatory genes by BLASTp (identities * coverage ≥ 0.64), enumerating validated gene counts per taxon. Clicking on a specific taxon (e.g., Streptococcus pneumoniae) provides access to strain list and gene information.

Species  774 Genus  48 Family  31 Order  24 Class  14 Phylum  9 Kingdom  4 Domain  2

Species

Total gene count 666435 (per strain count)

Bacillus subtilis

40139 (110.9)

Bacillus amyloliquefaciens

9914 (107.8)

Bacillus licheniformis

5076 (105.8)

Streptococcus equinus

903 (100.3)

Streptococcus ratti

97 (97)

Streptococcus mitis

1427 (95.1)

Streptococcus sanguinis

665 (95)

Streptococcus canis

569 (94.8)

Streptococcus mutans

2840 (94.7)

Streptococcus pneumoniae

21627 (94)

Streptococcus cristatus

372 (93)

Streptococcus salivarius

3432 (92.8)

Streptococcus gordonii

1204 (92.6)

Streptococcus urinalis

92 (92)

Streptococcus anginosus

1926 (91.7)

Streptococcus constellatus

732 (91.5)

Streptococcus intermedius

728 (91)

Streptococcus oralis

1874 (89.2)

Streptococcus infantis

89 (89)

Streptococcus infantarius

89 (89)

Streptococcus sobrinus

524 (87.3)

Streptococcus gallolyticus

769 (85.4)

Streptococcus thermophilus

11237 (85.1)

Streptococcus dysgalactiae

3461 (84.4)

Streptococcus vestibularis

167 (83.5)

Streptococcus pasteurianus

499 (83.2)

Streptococcus macedonicus

249 (83)

Streptococcus lutetiensis

497 (82.8)

Streptococcus agalactiae

12899 (81.1)

Streptococcus suis

12036 (80.2)

Streptococcus pseudoporcinus

234 (78)

Streptococcus pyogenes

28315 (77.6)

Streptococcus uberis

309 (77.3)

Streptococcus parauberis

1304 (76.7)

Lactococcus lactis

6190 (66.6)

Latilactobacillus sakei

2572 (64.3)

Staphylococcus aureus

99400 (63.2)

Pseudomonas aeruginosa

55184 (58.5)

Acinetobacter baumannii

43836 (54.8)

Thermoactinomyces vulgaris

106 (53)

Vibrio cholerae

7475 (53)

Acinetobacter nosocomialis

846 (52.9)

Vibrio campbellii

1245 (51.9)

Neisseria meningitidis

6219 (51.8)

Vibrio parahaemolyticus

6420 (51.8)

Vibrio vulnificus

1526 (50.9)

Neisseria gonorrhoeae

10054 (50.3)

Neisseria subflava

401 (50.1)

Legionella pneumophila

7184 (48.5)

Aliivibrio fischeri

96 (48)

Leuconostoc carnosum

280 (46.7)

Pseudomonas fluorescens

1058 (46)

Acinetobacter baylyi

136 (45.3)

Actinobacillus suis

135 (45)

Neisseria elongata

180 (45)

Escherichia coli

176059 (45)

Kingella kingae

307 (43.9)

Azotobacter vinelandii

263 (43.8)

Eikenella corrodens

128 (42.7)

Haemophilus influenzae

4696 (42.3)

Haemophilus parainfluenzae

769 (40.5)

Xylella fastidiosa

2730 (40.1)

Ralstonia pseudosolanacearum

1601 (40)

Thermus thermophilus

1241 (38.8)

Aggregatibacter aphrophilus

194 (38.8)

Avibacterium paragallinarum

831 (37.8)

Streptomyces chengbuensis

37 (37)

Histophilus somni

1182 (36.9)

Deinococcus radiodurans

509 (36.4)

Glaesserella parasuis

956 (35.4)

Thermus aquaticus

35 (35)

Streptomyces tabacisoli

35 (35)

Aggregatibacter actinomycetemcomitans

829 (34.5)

Gallibacterium anatis

310 (34.4)

Actinobacillus pleuropneumoniae

1528 (33.2)

Synechococcus elongatus

453 (32.4)

Streptomyces sirii

32 (32)

Ectopseudomonas mendocina

191 (31.8)

Cardiobacterium hominis

60 (30)

Campylobacter jejuni

13460 (29.8)

Campylobacter coli

2471 (28.7)

Helicobacter pylori

10515 (28.4)

Bradyrhizobium japonicum

456 (25.3)

Chlorobium limicola

24 (24)

Porphyromonas gingivalis

712 (20.9)

Riemerella columbina

20 (20)

Riemerella anatipestifer

1023 (19.7)

Agrobacterium tumefaciens

963 (16.9)

Methylobacterium organophilum

14 (14)

Aquipseudomonas alcaligenes

51 (12.8)

Methanococcus maripaludis

70 (10)

Stutzerimonas stutzeri

46 (1.4)

Lactococcus cremoris

49 (1.2)

Thermococcus kodakarensis

2 (0.7)

Streptomyces sp. NBC_00358

33 (<0.1)

Streptomyces sp. NBC_00659

33 (<0.1)

Streptomyces sp. P3

33 (<0.1)

Streptomyces sp. NBC_01537

33 (<0.1)

Streptomyces sp. GS7

33 (<0.1)

Streptomyces sp. NBC_00442

34 (<0.1)

Streptomyces sp. WAC 01438

33 (<0.1)

Streptomyces sp. cg28

33 (<0.1)

Streptomyces sp. NBC_00310

33 (<0.1)

Streptomyces sp. LX-29

33 (<0.1)

Streptomyces sp. 891-h

33 (<0.1)

Streptomyces sp. AM 2-1-1

33 (<0.1)

Streptomyces sp. GMY02

33 (<0.1)

Streptomyces sp. CB09030

33 (<0.1)

Streptomyces sp. M54

33 (<0.1)

Streptomyces sp. NBC_00151

33 (<0.1)

Streptomyces sp. NBC_01243

34 (<0.1)

Streptomyces sp. NBC_01232

33 (<0.1)

Streptomyces sp. NBC_00487

33 (<0.1)

Streptomyces sp. Caat 7-52

33 (<0.1)

Streptomyces sp. NBC_00496

34 (<0.1)

Streptomyces sp. NBC_00872

34 (<0.1)

Streptomyces sp. NBC_00539

34 (<0.1)

Streptomyces sp. CMB-StM0423

34 (<0.1)

Streptomyces explomaris

34 (<0.1)

Streptomyces sp. NBC_01485

34 (<0.1)

Streptomyces sp. R33

34 (<0.1)

Streptomyces sp. NBC_00464

34 (<0.1)

Streptomyces sp. NBC_00341

34 (<0.1)

Streptomyces sp. CRCS-T-1

34 (<0.1)

Streptomyces sp. WAC 01529

34 (<0.1)

Streptomyces sp. LRE541

34 (<0.1)

Streptomyces sp. XC 2026

34 (<0.1)

Streptomyces sp. NA02536

33 (<0.1)

Streptomyces sp. G7(2002)

34 (<0.1)

Streptomyces sp. NBC_00582

34 (<0.1)

Streptomyces sp. NBC_00390

34 (<0.1)

Streptomyces sp. NBC_01102

34 (<0.1)

Streptomyces sp. NBC_00859

34 (<0.1)

Streptomyces sp. NBC_00704

34 (<0.1)

Streptomyces sp. NBC_01362

33 (<0.1)

Streptomyces sp. NBC_00690

33 (<0.1)

Streptomyces sp. NBC_01358

33 (<0.1)

Streptomyces sp. NBC_00029

33 (<0.1)

Streptomyces sp. 604F

33 (<0.1)

Streptomyces sp. CB04723

33 (<0.1)

Streptomyces sp. Sge12

33 (<0.1)

Synechocystis sp. PCC 6714

33 (<0.1)

Streptomyces sp. SGAir0924

33 (<0.1)

Streptomyces sp. SCA2-17

33 (<0.1)

Streptomyces sp. NBC_00846

33 (<0.1)

Streptomyces sp. B146

33 (<0.1)

Streptomyces sp. NBC_01426

32 (<0.1)

Streptomyces sp. NBU3104

32 (<0.1)

Streptomyces sp. NBC_01429

32 (<0.1)

Streptomyces sp. NBC_01428

33 (<0.1)

Streptomyces sp. PCS3-D2

33 (<0.1)

Streptomyces sp. NBC_00304

33 (<0.1)

Streptomyces sp. NBC_01794

34 (<0.1)

Streptomyces sp. CGMCC 4.1456

33 (<0.1)

Streptomyces sp. NBC_00046

33 (<0.1)

Streptomyces sp. NBC_01276

33 (<0.1)

Streptomyces sp. NBC_00133

33 (<0.1)

Streptomyces sp. NBC_01438

33 (<0.1)

Streptomyces sp. NBC_01244

33 (<0.1)

Streptomyces sp. DSS69

33 (<0.1)

Streptomyces sp. NBC_00385

33 (<0.1)

Streptomyces sp. Je 1-4 4N24_ara

33 (<0.1)

Streptomyces sp. NBC_01435

33 (<0.1)

Streptomyces sp. NBC_00728

32 (<0.1)

Streptomyces sp. HUAS 31

33 (<0.1)

Streptomyces sp. NBC_00104

33 (<0.1)

Streptomyces sp. NBC_00443

33 (<0.1)

Streptomyces sp. NBC_01218

33 (<0.1)

Streptomyces sp. NBC_00503

33 (<0.1)

Streptomyces sp. NBC_00096

33 (<0.1)

Streptomyces sp. Je 1-4 4N24

33 (<0.1)

Streptomyces sp. NBC_01260

33 (<0.1)

Synechocystis sp. PCC 7339

33 (<0.1)

Streptomyces sp. ADI95-16

33 (<0.1)

Streptomyces sp. RerS4

33 (<0.1)

Streptomyces sp. G11C(2021)

32 (<0.1)

Streptomyces sp. ST1015

35 (<0.1)

Streptomyces sp. NBC_01116

35 (<0.1)

Streptomyces sp. NBC_01207

35 (<0.1)

Streptomyces sp. NBC_01186

35 (<0.1)

Streptomyces sp. NBC_01187

35 (<0.1)

Streptomyces sp. NBC_01005

35 (<0.1)

Streptomyces sp. NBC_01017

35 (<0.1)

Streptomyces sp. R28

35 (<0.1)

Streptomyces sp. KN37

35 (<0.1)

Streptomyces sp. NBC_00987

35 (<0.1)

Streptomyces sp. NBC_00257

35 (<0.1)

Streptomyces sp. NBC_01314

35 (<0.1)

Streptomyces sp. EAS-AB2608

32 (<0.1)

Streptomyces sp. NBC_00069

35 (<0.1)

Streptomyces sp. NBC_01213

35 (<0.1)

Streptomyces sp. NBC_00289

35 (<0.1)

Streptomyces sp. NBC_00342

35 (<0.1)

Streptomyces sp. CG1

35 (<0.1)

Streptomyces sp. NBC_00075

35 (<0.1)

Streptomyces sp. NBC_00111

35 (<0.1)

Streptomyces sp. NBC_01259

35 (<0.1)

Streptomyces sp. NBC_00388

35 (<0.1)

Streptomyces sp. NBC_01527

35 (<0.1)

Streptomyces sp. NBC_00055

35 (<0.1)

Streptomyces sp. SJL17-4

35 (<0.1)

Streptomyces sp. YPW6

35 (<0.1)

Streptomyces sp. Je 1-332

35 (<0.1)

Streptomyces sp. NBC_01336

35 (<0.1)

Streptomyces sp. NBC_01304

35 (<0.1)

Streptomyces sp. NBC_01520

35 (<0.1)

Streptomyces sp. NBC_01707

35 (<0.1)

Streptomyces sp. M2

35 (<0.1)

Streptomyces sp. CA-256286

35 (<0.1)

Streptomyces sp. NBC_00344

35 (<0.1)

Streptomyces citrinus

35 (<0.1)

Streptomyces sp. NBC_01650

35 (<0.1)

Streptomyces sp. NBC_01296

35 (<0.1)

Streptomyces sp. NBC_01614

35 (<0.1)

Streptomyces sp. NBC_01324

35 (<0.1)

Synechocystis sp. IPPAS B-1465

35 (<0.1)

Streptomyces sp. NBC_00161

35 (<0.1)

Streptomyces sp. T12

35 (<0.1)

Streptomyces sp. NBC_01261

35 (<0.1)

Streptomyces sp. NBC_00299

34 (<0.1)

Synechocystis sp. PCC 7338

34 (<0.1)

Streptomyces sp. NBC_00343

34 (<0.1)

Streptomyces sp. NBC_01431

34 (<0.1)

Streptomyces sp. NBC_00287

34 (<0.1)

Streptomyces sp. NBC_01356

34 (<0.1)

Streptomyces sp. NBC_00035

34 (<0.1)

Streptomyces sp. NBC_00667

34 (<0.1)

Streptomyces sp. NBC_01635

34 (<0.1)

Streptomyces sp. NBC_00178

34 (<0.1)

Streptomyces sp. NBC_00239

34 (<0.1)

Streptomyces sp. MOE7

34 (<0.1)

Streptomyces sp. CG4

34 (<0.1)

Streptomyces sp. cg36

34 (<0.1)

Streptomyces sp. SM17

34 (<0.1)

Streptomyces sp. JCM 35825

34 (<0.1)

Streptomyces sp. endophyte_N2

34 (<0.1)

Streptomyces sp. 3211

34 (<0.1)

Streptomyces sp. GF20

34 (<0.1)

Streptomyces sp. S584

34 (<0.1)

Streptomyces sp. NBC_01235

34 (<0.1)

Streptomyces sp. HUAS ZL42

34 (<0.1)

Streptomyces sp. NBC_00197

34 (<0.1)

Streptomyces sp. MUM 178J

34 (<0.1)

Streptomyces sp. NBC_01210

34 (<0.1)

Streptomyces sp. NBC_00386

34 (<0.1)

Streptomyces sp. NBC_01716

34 (<0.1)

Streptomyces sp. CGMCC 4.1772

35 (<0.1)

Streptomyces sp. NBC_01208

35 (<0.1)

Streptomyces sp. NBC_01351

35 (<0.1)

Streptomyces sp. VNUA74

34 (<0.1)

Streptomyces sp. NBC_00016

34 (<0.1)

Streptomyces sp. NBC_01732

34 (<0.1)

Streptomyces sp. NBC_00316

34 (<0.1)

Streptomyces sp. NBC_01220

34 (<0.1)

Streptomyces sp. NBC_00024

34 (<0.1)

Streptomyces sp. NBC_01591

34 (<0.1)

Streptomyces sp. NBC_00664

34 (<0.1)

Streptomyces sp. NBC_00597

34 (<0.1)

Streptomyces sp. JL3001

34 (<0.1)

Streptomyces sp. R11

34 (<0.1)

Streptomyces sp. NBC_00869

32 (<0.1)

Streptomyces sp. MH191

29 (<0.1)

Streptomyces sp. NBC_00400

29 (<0.1)

Streptomyces sp. NBC_00184

29 (<0.1)

Streptomyces sp. DG1A-41

29 (<0.1)

Streptomyces sp. cg2

29 (<0.1)

Streptomyces sp. NBC_00441

29 (<0.1)

Streptomyces sp. XD-27

29 (<0.1)

Streptomyces sp. NBC_00209

29 (<0.1)

Streptomyces sp. NBC_00525

29 (<0.1)

Streptomyces sp. S8

29 (<0.1)

Streptomyces flavusporus

29 (<0.1)

Streptomyces sp. AMCC400023

29 (<0.1)

Streptomyces sp. NBC_00670

29 (<0.1)

Streptomyces sp. NBC_01803

29 (<0.1)

Streptomyces sp. NBC_01171

29 (<0.1)

Streptomyces sp. NBC_00223

29 (<0.1)

Streptomyces sp. FXJ1.172

29 (<0.1)

Streptomyces sp. NHF165

29 (<0.1)

Streptomyces sp. NBC_01341

29 (<0.1)

Streptomyces sp. NBC_00828

29 (<0.1)

Streptomyces sp. NBC_00631

30 (<0.1)

Streptomyces sp. PAMC 26508

30 (<0.1)

Streptomyces sp. AM 4-1-1

30 (<0.1)

Streptomyces sp. NBC_00557

30 (<0.1)

Streptomyces sp. S4.7

30 (<0.1)

Streptomyces sp. B21-104

30 (<0.1)

Streptomyces sp. GBA 94-10 4N24

30 (<0.1)

Streptomyces sp. NBC_01013

30 (<0.1)

Streptomyces sp. NBC_00454

30 (<0.1)

Streptomyces sp. CFMR 7

30 (<0.1)

Streptomyces sp. AM 3-1-1

30 (<0.1)

Streptomyces sp. 2P-4

30 (<0.1)

Streptomyces sp. HNA39

30 (<0.1)

Streptomyces sp. S501

30 (<0.1)

Streptomyces sp. NBC_01601

30 (<0.1)

Streptomyces sp. Tu 2975

30 (<0.1)

Streptomyces sp. P9-2B-1

30 (<0.1)

Streptomyces sp. SM18

30 (<0.1)

Streptomyces sp. NBC_00853

30 (<0.1)

Streptomyces sp. R17

30 (<0.1)

Streptomyces sp. NBC_00435

30 (<0.1)

Streptomyces sp. NBC_00566

29 (<0.1)

Streptomyces sp. CLI2509

29 (<0.1)

Streptomyces sp. KL2

25 (<0.1)

Streptomyces sp. NBC_01454

25 (<0.1)

Streptococcus ictaluri

25 (<0.1)

Streptomyces sp. Pv4-95

25 (<0.1)

Streptomyces sp. NBC_01498

26 (<0.1)

Streptomyces sp. SCSIO 75703

26 (<0.1)

Streptomyces sp. NBC_01335

26 (<0.1)

Streptomyces sp. NBC_01456

26 (<0.1)

Streptomyces sp. SCUT-3

26 (<0.1)

Streptomyces sp. GD-15H

24 (<0.1)

Streptomyces sp. KMM 9044

24 (<0.1)

Streptococcus henryi

6 (<0.1)

Streptococcus orisratti

5 (<0.1)

Streptococcus devriesei

4 (<0.1)

Methanoculleus thermophilus

1 (<0.1)

Streptococcus sinensis

6 (<0.1)

Streptococcus castoreus

8 (<0.1)

Streptomyces sp. MST-110588

24 (<0.1)

Actinacidiphila sp. ITFR-21

23 (<0.1)

Streptomyces sp. GQFP

22 (<0.1)

Streptomyces sp. MRC013

26 (<0.1)

Streptomyces sp. HF10

26 (<0.1)

Streptomyces sp. NA04227

28 (<0.1)

Streptomyces sp. SS162

28 (<0.1)

Streptomyces sp. NBC_00726

28 (<0.1)

Streptomyces sp. 71268

28 (<0.1)

Streptomyces sp. NBC_00138

28 (<0.1)

Streptomyces sp. NBC_00727

28 (<0.1)

Streptomyces sp. NBC_01190

29 (<0.1)

Streptomyces sp. NBC_00523

28 (<0.1)

Streptomyces sp. LBUM 1475

28 (<0.1)

Streptomyces sp. HSG2

28 (<0.1)

Streptomyces sp. P9-2B-2

28 (<0.1)

Streptomyces sp. SCSIO ZS0520

27 (<0.1)

Streptomyces sp. ITFR-16

27 (<0.1)

Streptomyces sp. HM190

27 (<0.1)

Streptomyces sp. NBC_00247

27 (<0.1)

Streptomyces sp. LBUM 1482

27 (<0.1)

Streptomyces sp. 11x1

28 (<0.1)

Streptomyces sp. BPTC-684

28 (<0.1)

Streptomyces sp. NBC_01618

28 (<0.1)

Streptomyces sp. NBC_01198

30 (<0.1)

Streptomyces sp. NBC_00391

31 (<0.1)

Streptomyces sp. NBC_01420

32 (<0.1)

Streptomyces sp. NBC_00891

32 (<0.1)

Streptomyces sp. NBC_01178

32 (<0.1)

Streptomyces sp. NBC_00890

32 (<0.1)

Streptomyces sp. W1SF4

32 (<0.1)

Streptomyces sp. NBC_01294

32 (<0.1)

Streptomyces sp. NBC_00876

32 (<0.1)

Streptomyces sp. NBC_01262

32 (<0.1)

Streptomyces sp. NBC_01754

32 (<0.1)

Streptomyces sp. NBC_01268

32 (<0.1)

Streptomyces sp. FR-008

32 (<0.1)

Streptomyces sp. NBC_00715

32 (<0.1)

Streptomyces sp. CNQ-509

32 (<0.1)

Streptomyces sp. NBC_01197

32 (<0.1)

Streptomyces sp. NBC_01343

32 (<0.1)

Streptomyces sp. NBC_00820

32 (<0.1)

Streptomyces sp. NBC_01281

32 (<0.1)

Streptomyces sp. NBC_01180

32 (<0.1)

Streptomyces sp. NBC_01477

32 (<0.1)

Streptomyces sp. NA13

32 (<0.1)

Streptomyces sp. NBC_00873

32 (<0.1)

Streptomyces sp. EMB24

32 (<0.1)

Streptomyces sp. SCSIO 30461

32 (<0.1)

Streptomyces sp. NBC_00376

32 (<0.1)

Streptomyces sp. NBC_00829

32 (<0.1)

Streptomyces sp. DSM 40868

32 (<0.1)

Streptomyces sp. NBC_01590

32 (<0.1)

Streptomyces sp. NEAU-sy36

32 (<0.1)

Streptomyces sp. NBC_00879

32 (<0.1)

Streptomyces sp. NBC_00536

32 (<0.1)

Streptomyces sp. NBC_00513

32 (<0.1)

Streptomyces sp. NBC_00885

32 (<0.1)

Streptomyces sp. NBUA17

32 (<0.1)

Streptomyces sp. BJ20

32 (<0.1)

Streptomyces sp. NBC_01383

32 (<0.1)

Streptomyces sp. ITFR-6

32 (<0.1)

Streptomyces sp. NBC_01476

32 (<0.1)

Streptomyces sp. NBC_00842

32 (<0.1)

Streptomyces sp. NBC_01525

32 (<0.1)

Streptomyces sp. NBC_00425

32 (<0.1)

Streptomyces sp. BBFR2

32 (<0.1)

Streptomyces sp. NBC_01217

32 (<0.1)

Streptomyces sp. WZ-12

32 (<0.1)

Streptomyces sp. LBUM 1480

31 (<0.1)

Streptomyces sp. NBC_01538

31 (<0.1)

Streptomyces sp. A10(2020)

31 (<0.1)

Streptomyces sp. NBC_01216

31 (<0.1)

Streptomyces sp. NBC_00158

31 (<0.1)

Streptomyces sp. NBC_01497

31 (<0.1)

Streptomyces sp. NBC_00012

31 (<0.1)

Streptomyces sp. NBC_01558

31 (<0.1)

Streptomyces sp. F41

31 (<0.1)

Streptomyces sp. WA1-19

31 (<0.1)

Streptomyces sp. NBC_00996

31 (<0.1)

Streptomyces sp. R02

31 (<0.1)

Streptomyces sp. BI87

31 (<0.1)

Streptomyces sp. TYQ1024

31 (<0.1)

Streptomyces sp. NBC_01725

31 (<0.1)

Streptomyces sp. NBC_00827

31 (<0.1)

Streptomyces sp. SNU607

31 (<0.1)

Streptomyces sp. NBC_00481

31 (<0.1)

Streptomyces sp. NBC_01451

31 (<0.1)

Streptomyces sp. NBC_00057

31 (<0.1)

Streptomyces sp. NBC_00322

31 (<0.1)

Streptomyces sp. NBC_00101

32 (<0.1)

Streptomyces sp. VNUA116

32 (<0.1)

Streptomyces sp. fd1-xmd

32 (<0.1)

Streptomyces sp. SAT1

32 (<0.1)

Streptomyces sp. NBC_01089

32 (<0.1)

Streptomyces sp. NBC_00210

32 (<0.1)

Streptomyces sp. NBC_01478

35 (<0.1)

Streptomyces sp. Je 1-369

32 (<0.1)

Streptomyces sp. FXY-T5

32 (<0.1)

Streptomyces sp. P8-A8

32 (<0.1)

Streptomyces sp. NBC_00234

32 (<0.1)

Streptomyces sp. NBC_00984

31 (<0.1)

Streptomyces sp. NBC_01423

31 (<0.1)

Streptomyces sp. VNUA24

31 (<0.1)

Streptomyces sp. R39

31 (<0.1)

Streptomyces sp. WP-1

31 (<0.1)

Streptomyces sp. NBC_00870

32 (<0.1)

Streptomyces sp. 184

31 (<0.1)

Streptomyces sp. JL4002

31 (<0.1)

Streptomyces sp. PLM4

32 (<0.1)

Streptomyces sp. NBC_01238

36 (<0.1)

Streptomyces sp. NBC_01396

39 (<0.1)

Streptomyces sp. NBC_01550

39 (<0.1)

Streptomyces sp. CB09001

39 (<0.1)

Streptomyces sp. SYP-A7193

39 (<0.1)

Streptomyces sp. NBC_01594

39 (<0.1)

Streptomyces sp. HP-A2021

40 (<0.1)

Streptomyces sp. NBC_00169

40 (<0.1)

Streptomyces sp. NBC_01761

40 (<0.1)

Streptomyces sp. R35

40 (<0.1)

Streptomyces sp. WAC 06738

39 (<0.1)

Streptomyces sp. NBC_01579

39 (<0.1)

Streptomyces sp. NBC_01439

39 (<0.1)

Streptomyces sp. NBC_01369

39 (<0.1)

Streptomyces sp. NBC_01708

39 (<0.1)

Streptomyces sp. NBC_01511

39 (<0.1)

Streptomyces sp. N50

39 (<0.1)

Streptomyces sp. NBC_01751

39 (<0.1)

Streptomyces sp. NBC_01474

39 (<0.1)

Streptomyces sp. NBC_01760

39 (<0.1)

Streptomyces sp. NBC_01508

39 (<0.1)

Streptomyces sp. CY1

40 (<0.1)

Streptomyces sp. NBC_01124

40 (<0.1)

Streptomyces sp. NBC_01465

40 (<0.1)

Streptomyces sp. NA03103

40 (<0.1)

Streptomyces sp. Rer75

40 (<0.1)

Streptomyces sp. 769

40 (<0.1)

Streptomyces sp. V17-9

40 (<0.1)

Streptomyces sp. NBC_00461

40 (<0.1)

Streptomyces sp. NBC_00271

40 (<0.1)

Streptomyces sp. NBC_00519

40 (<0.1)

Streptomyces sp. NBC_01390

40 (<0.1)

Streptomyces sp. NBC_00076

40 (<0.1)

Streptomyces sp. NBC_00150

40 (<0.1)

Streptomyces sp. NBC_00145

40 (<0.1)

Streptomyces sp. NBC_01003

40 (<0.1)

Streptomyces sp. NBC_01023

40 (<0.1)

Streptomyces sp. NBC_00989

40 (<0.1)

Streptomyces sp. BSE6.1

40 (<0.1)

Streptomyces sp. NBC_00624

40 (<0.1)

Streptomyces sp. NBC_01367

40 (<0.1)

Streptomyces sp. Go40/10

40 (<0.1)

Streptomyces sp. NBC_01386

39 (<0.1)

Streptomyces sp. NBC_00080

39 (<0.1)

Streptomyces sp. NBC_01104

39 (<0.1)

Streptomyces sp. NBC_01422

38 (<0.1)

Streptomyces sp. NBC_01615

38 (<0.1)

Streptomyces sp. SH5

38 (<0.1)

Streptomyces sp. BBFR25

39 (<0.1)

Streptomyces sp. NBC_01727

39 (<0.1)

Streptomyces sp. NBC_00647

39 (<0.1)

Streptomyces sp. R-74717

39 (<0.1)

Streptomyces sp. NBC_00117

39 (<0.1)

Streptomyces sp. NBC_01685

38 (<0.1)

Streptomyces sp. NBC_01643

38 (<0.1)

Streptomyces sp. NBC_01361

38 (<0.1)

Streptomyces sp. SYP-A7185

38 (<0.1)

Streptomyces sp. NBC_00267

38 (<0.1)

Streptomyces sp. S465

38 (<0.1)

Streptomyces sp. Y1

38 (<0.1)

Streptomyces sp. AM8-1-1

38 (<0.1)

Streptomyces sp. NBC_00459

38 (<0.1)

Streptomyces sp. NBC_01515

38 (<0.1)

Streptomyces sp. NBC_00121

38 (<0.1)

Streptomyces sp. NBC_00269

39 (<0.1)

Streptomyces sp. NBC_01020

39 (<0.1)

Streptomyces sp. NBC_00250

39 (<0.1)

Streptomyces sp. NBC_01693

39 (<0.1)

Streptomyces sp. NBC_01280

39 (<0.1)

Streptomyces sp. NBC_00090

39 (<0.1)

Streptomyces sp. NBC_00228

39 (<0.1)

Streptomyces sp. NBC_00147

39 (<0.1)

Streptomyces sp. NBC_00589

39 (<0.1)

Streptomyces sp. NBC_00932

39 (<0.1)

Streptomyces sp. NBC_00208

39 (<0.1)

Streptomyces sp. NBC_01578

39 (<0.1)

Streptomyces sp. NBC_00259

39 (<0.1)

Streptomyces sp. AM2-3-1

39 (<0.1)

Streptomyces sp. WY228

39 (<0.1)

Streptomyces sp. NBC_00775

39 (<0.1)

Streptomyces sp. NBC_00490

39 (<0.1)

Streptomyces sp. NBC_00371

39 (<0.1)

Streptomyces sp. NBC_01723

39 (<0.1)

Streptomyces sp. NBC_00649

39 (<0.1)

Streptomyces sp. NBC_00172

39 (<0.1)

Streptomyces sp. NBC_01318

40 (<0.1)

Streptomyces sp. CMC78

40 (<0.1)

Streptomyces sp. NBC_00626

42 (<0.1)

Synechocystis sp. LKSZ1

42 (<0.1)

Streptomyces sp. CA-210063

42 (<0.1)

Streptomyces sp. NBC_01518

42 (<0.1)

Streptomyces sp. NBC_00457

43 (<0.1)

Streptomyces sp. WA6-1-16

43 (<0.1)

Streptomyces sp. NBC_01483

43 (<0.1)

Streptomyces sp. NBC_00356

43 (<0.1)

Streptomyces sp. NBC_00444

43 (<0.1)

Streptomyces sp. NBC_01378

42 (<0.1)

Streptomyces sp. NBC_00370

42 (<0.1)

Streptomyces sp. Tue 6075

42 (<0.1)

Streptomyces sp. NBC_00484

42 (<0.1)

Streptomyces sp. NBC_00493

42 (<0.1)

Streptomyces sp. NBC_00273

42 (<0.1)

Streptomyces sp. NBC_00683

42 (<0.1)

Streptomyces sp. NBC_00311

42 (<0.1)

Streptomyces sp. NBC_01320

42 (<0.1)

Streptomyces sp. NBC_00019

42 (<0.1)

Streptomyces sp. NBC_00882

42 (<0.1)

Streptomyces sp. NBC_00498

44 (<0.1)

Streptomyces sp. 2-1

44 (<0.1)

Streptomyces sp. NBC_00499

48 (<0.1)

Streptomyces sp. NBC_01604

46 (<0.1)

Streptomyces sp. NL15-2K

46 (<0.1)

Streptomyces sp. NBC_01613

46 (<0.1)

Streptomyces sp. NBC_00258

50 (<0.1)

Streptomyces sp. NBC_00887

52 (<0.1)

Synechocystis sp. PCC 6803

442 (<0.1)

Faucicola osloensis

438 (<0.1)

Streptococcus macacae

86 (<0.1)

Streptomyces sp. NBC_00445

46 (<0.1)

Streptomyces sp. Inha503

45 (<0.1)

Streptomyces sp. 11-1-2

45 (<0.1)

Streptomyces sp. NBC_00334

44 (<0.1)

Streptomyces sp. NBC_00483

44 (<0.1)

Streptomyces sp. NA07423

45 (<0.1)

Streptomyces sp. NBC_00212

45 (<0.1)

Streptomyces sp. M56

45 (<0.1)

Streptomyces sp. DSM 40750

45 (<0.1)

Streptomyces sp. HNM0561

45 (<0.1)

Streptomyces sp. SX92

41 (<0.1)

Streptomyces sp. NBC_01718

41 (<0.1)

Streptomyces sp. NBC_00986

41 (<0.1)

Streptomyces sp. AgN23

41 (<0.1)

Streptomyces sp. NBC_01352

41 (<0.1)

Streptomyces sp. KPB2

41 (<0.1)

Streptomyces sp. NBC_00005

41 (<0.1)

Streptomyces sp. NBC_00207

41 (<0.1)

Streptomyces sp. NBC_00618

41 (<0.1)

Streptomyces sp. NBC_00224

41 (<0.1)

Streptomyces sp. Go-475

41 (<0.1)

Streptomyces sp. NA02950

41 (<0.1)

Streptomyces sp. NBC_00691

40 (<0.1)

Streptomyces sp. NBC_01763

40 (<0.1)

Streptomyces sp. CGMCC 4.7035

40 (<0.1)

Streptomyces sp. NBC_00455

40 (<0.1)

Streptomyces sp. NBC_00110

40 (<0.1)

Streptomyces sp. NBC_00105

40 (<0.1)

Streptomyces sp. HUAS CX7

40 (<0.1)

Streptomyces sp. R08

40 (<0.1)

Streptomyces sp. YS-B37

40 (<0.1)

Streptomyces sp. NBC_01077

40 (<0.1)

Streptomyces sp. NBC_01597

41 (<0.1)

Streptomyces sp. NBC_00841

41 (<0.1)

Streptomyces sp. NBC_01622

41 (<0.1)

Streptomyces sp. NBC_00366

41 (<0.1)

Streptomyces sp. NBC_01174

41 (<0.1)

Streptomyces sp. NBC_01353

41 (<0.1)

Streptomyces sp. NBC_00467

41 (<0.1)

Streptomyces sp. 135

41 (<0.1)

Streptomyces sp. NBC_00622

41 (<0.1)

Streptomyces sp. NBC_00453

41 (<0.1)

Streptomyces sp. NBC_00485

41 (<0.1)

Streptomyces sp. NBC_00079

41 (<0.1)

Streptomyces sp. NBC_00081

41 (<0.1)

Streptomyces sp. NBC_01589

41 (<0.1)

Streptomyces sp. NBC_01602

41 (<0.1)

Streptomyces sp. CB00271

41 (<0.1)

Streptomyces sp. NBC_00252

41 (<0.1)

Streptomyces sp. NBC_00724

41 (<0.1)

Streptomyces sp. NBC_00470

41 (<0.1)

Streptomyces sp. NBC_00988

41 (<0.1)

Streptomyces sp. NBC_00335

41 (<0.1)

Streptomyces sp. CA-278952

38 (<0.1)

Streptomyces sp. A1-5

38 (<0.1)

Streptomyces sp. S1D4-14

37 (<0.1)

Streptomyces sp. NBC_00009

37 (<0.1)

Streptomyces sp. NBC_00466

36 (<0.1)

Streptomyces sp. NEAU-S7GS2

36 (<0.1)

Streptomyces sp. NBC_00414

37 (<0.1)

Streptomyces sp. NBC_01717

37 (<0.1)

Streptomyces sp. NBC_01788

37 (<0.1)

Streptomyces sp. RLB1-8

37 (<0.1)

Streptomyces sp. NBC_00306

37 (<0.1)

Streptomyces sp. WAC00288

36 (<0.1)

Streptomyces sp. NBC_00569

36 (<0.1)

Streptomyces sp. NBC_01278

36 (<0.1)

Streptomyces sp. NBC_01233

36 (<0.1)

Streptomyces sp. NBC_00203

36 (<0.1)

Streptomyces sp. NBC_00114

36 (<0.1)

Streptomyces sp. NBC_01237

36 (<0.1)

Streptomyces sp. NBC_00280

36 (<0.1)

Streptomyces sp. TN58

36 (<0.1)

Streptomyces sp. NBC_00045

36 (<0.1)

Streptomyces sp. Z423-1

36 (<0.1)

Streptomyces sp. RLB1-9

37 (<0.1)

Streptomyces sp. RLB3-17

37 (<0.1)

Streptomyces sp. NBC_00211

37 (<0.1)

Streptomyces sp. CL7

37 (<0.1)

Streptomyces sp. NBC_01205

37 (<0.1)

Streptomyces sp. YIM 121038

37 (<0.1)

Streptomyces sp. NBC_00191

37 (<0.1)

Streptomyces sp. R21

37 (<0.1)

Streptomyces sp. NBC_01176

37 (<0.1)

Streptomyces sp. NBC_01462

37 (<0.1)

Streptomyces sp. S063

37 (<0.1)

Streptomyces sp. MMBL 11-1

37 (<0.1)

Streptomyces sp. CC0208

37 (<0.1)

Streptomyces sp. R41

37 (<0.1)

Streptomyces sp. NBC_00162

37 (<0.1)

Streptomyces sp. NBC_01800

37 (<0.1)

Streptomyces sp. NBC_01384

37 (<0.1)

Streptomyces sp. RPA4-2

37 (<0.1)

Streptomyces sp. NBC_01653

37 (<0.1)

Streptomyces sp. NBC_00272

37 (<0.1)

Streptomyces sp. SudanB5_2050

37 (<0.1)

Streptomyces sp. NBC_00645

36 (<0.1)

Streptomyces sp. R527F

36 (<0.1)

Streptomyces sp. NBC_01006

36 (<0.1)

Streptomyces sp. NBC_00838

36 (<0.1)

Streptomyces sp. NBC_01230

36 (<0.1)

Streptomyces sp. NBC_00053

36 (<0.1)

Streptomyces sp. NBC_01766

36 (<0.1)

Streptomyces sp. NBC_01775

36 (<0.1)

Streptomyces sp. NBC_00285

36 (<0.1)

Streptomyces sp. NBC_01460

36 (<0.1)

Streptomyces sp. R44

36 (<0.1)

Streptomyces sp. INR7

36 (<0.1)

Streptomyces sp. 147326

36 (<0.1)

Streptomyces sp. NBC_01795

35 (<0.1)

Streptomyces sp. So13.3

35 (<0.1)

Streptomyces sp. NBC_00243

35 (<0.1)

Streptomyces sp. NBC_00656

35 (<0.1)

Streptomyces sp. NBC_01410

35 (<0.1)

Streptomyces sp. NBC_01768

35 (<0.1)

Streptomyces sp. NBC_01808

35 (<0.1)

Streptomyces sp. NBC_01453

35 (<0.1)

Streptomyces sp. NBC_01750

35 (<0.1)

Streptomyces sp. f51

36 (<0.1)

Streptomyces sp. M92

36 (<0.1)

Streptomyces sp. NBC_00236

36 (<0.1)

Streptomyces sp. NBC_01267

36 (<0.1)

Streptomyces sp. NBC_00073

36 (<0.1)

Streptomyces sp. NBC_01022

36 (<0.1)

Streptomyces sp. NBC_01340

36 (<0.1)

Streptomyces sp. NBC_01471

36 (<0.1)

Streptomyces sp. QH1-20

36 (<0.1)

Streptomyces sp. NBC_01563

36 (<0.1)

Streptomyces sp. NBC_01530

36 (<0.1)

Streptomyces sp. NBC_00028

36 (<0.1)

Streptomyces sp. NBC_00122

36 (<0.1)

Streptomyces sp. NBC_01014

36 (<0.1)

Streptomyces sp. NBC_00637

36 (<0.1)

Streptomyces sp. NBC_00354

36 (<0.1)

Streptomyces sp. NBC_01212

36 (<0.1)

Streptomyces sp. NBC_01201

36 (<0.1)

Streptomyces sp. NBC_01387

36 (<0.1)

Streptomyces sp. NBC_00015

36 (<0.1)

Streptomyces sp. NBC_00328

36 (<0.1)

Streptomyces sp. NBC_00623

37 (<0.1)

Streptomyces sp. NBC_00554

37 (<0.1)

Streptomyces sp. NBC_01544

38 (<0.1)

Streptomyces sp. NBC_01715

38 (<0.1)

Streptomyces sp. NBC_00056

38 (<0.1)

Streptomyces sp. KY70

38 (<0.1)

Streptomyces sp. NBC_01255

38 (<0.1)

Streptomyces sp. NBC_01241

38 (<0.1)

Streptomyces sp. NBC_00048

38 (<0.1)

Streptomyces sp. NBC_00723

38 (<0.1)

Streptomyces sp. NBC_00826

38 (<0.1)

Streptomyces sp. NBC_00134

38 (<0.1)

Streptomyces sp. RTd22

38 (<0.1)

Streptomyces sp. CCM_MD2014

38 (<0.1)

Streptomyces sp. NBC_01167

38 (<0.1)

Streptomyces sp. MBT27

38 (<0.1)

Streptomyces sp. NBC_01257

38 (<0.1)

Streptomyces sp. AHU1

38 (<0.1)

Streptomyces sp. A2-16

38 (<0.1)

Streptomyces sp. NBC_01506

38 (<0.1)

Streptomyces sp. NBC_01617

38 (<0.1)

Streptomyces sp. YH02

38 (<0.1)

Streptomyces sp. NBC_01321

38 (<0.1)

Streptomyces sp. NBC_01240

38 (<0.1)

Streptomyces sp. NBC_01620

38 (<0.1)

Streptomyces sp. NBC_00377

38 (<0.1)

Streptomyces sp. HUAS 15-9

38 (<0.1)

Streptomyces sp. NBC_00440

38 (<0.1)

Streptomyces sp. NBC_01696

38 (<0.1)

Streptomyces sp. NBC_00562

38 (<0.1)

Streptomyces sp. NBC_01411

38 (<0.1)

Streptomyces sp. NBC_01224

38 (<0.1)

Streptomyces sp. NBC_00500

38 (<0.1)

Streptomyces sp. NBC_01762

38 (<0.1)

Streptomyces sp. NBC_00696

38 (<0.1)

Streptomyces sp. NBC_01288

38 (<0.1)

Streptomyces sp. NBC_01185

38 (<0.1)

Streptomyces sp. NBC_00868

38 (<0.1)

Streptomyces sp. Li-HN-5-11

38 (<0.1)

Streptomyces sp. NBC_01108

38 (<0.1)

Streptomyces sp. NBC_01724

38 (<0.1)

Streptomyces sp. SirexAA-E

38 (<0.1)

Streptomyces sp. NBC_00648

38 (<0.1)

Streptomyces sp. NBC_00353

38 (<0.1)

Streptomyces sp. NBC_00588

38 (<0.1)

Streptomyces sp. VN1

37 (<0.1)

Streptomyces sp. SS52

37 (<0.1)

Streptomyces sp. NBC_00190

37 (<0.1)

Streptomyces sp. BB1-1-1

37 (<0.1)

Streptomyces sp. NBC_01547

37 (<0.1)

Streptomyces sp. NBC_00040

37 (<0.1)

Streptomyces sp. NBC_01012

37 (<0.1)

Streptomyces sp. NBC_01450

37 (<0.1)

Streptomyces sp. BPPL-273

37 (<0.1)

Streptomyces sp. NBC_01637

37 (<0.1)

Streptomyces sp. NBC_00144

37 (<0.1)

Streptomyces sp. Mg1

37 (<0.1)

Streptomyces sp. NBC_01546

37 (<0.1)

Streptomyces sp. CdTB01

37 (<0.1)

Streptomyces sp. NBC_01136

37 (<0.1)

Streptomyces sp. NBC_01568

37 (<0.1)

Streptomyces sp. NBC_01236

37 (<0.1)

Streptomyces sp. NBC_00663

37 (<0.1)

Streptomyces sp. NBC_01166

37 (<0.1)

Streptomyces sp. S1A1-8

37 (<0.1)

Streptomyces sp. FZ201

37 (<0.1)

Streptomyces sp. SudanB91_2054

38 (<0.1)

Streptomyces sp. JUS-F4

38 (<0.1)

Streptomyces sp. NBC_00576

38 (<0.1)

Streptomyces sp. 1268

37 (<0.1)

Streptomyces sp. KY75

38 (<0.1)

Streptomyces sp. NBC_00118

38 (<0.1)

Streptomyces sp. NBC_01689

38 (<0.1)

Streptomyces sp. JL1001

38 (<0.1)

Streptomyces sp. NBC_01445

38 (<0.1)

Streptomyces sp. NBC_00963

37 (<0.1)

Streptomyces sp. NBC_01298

37 (<0.1)

Streptomyces sp. NBC_00822

37 (<0.1)

Streptomyces sp. NBC_00825

37 (<0.1)

Streptomyces sp. NBC_01334

37 (<0.1)

Streptomyces sp. SudanB135_2055

37 (<0.1)

Streptomyces sp. NBC_01092

37 (<0.1)

Streptomyces sp. BBFR51

37 (<0.1)

Streptomyces sp. A144

37 (<0.1)

Streptomyces sp. NBC_01455

37 (<0.1)

Streptomyces sp. NBC_00658

35 (<0.1)

Genus

Total gene count 666435

Escherichia

176059

Streptococcus

111306

Staphylococcus

99400

Pseudomonas

56242

Bacillus

55129

Acinetobacter

44818

Streptomyces

23628

Neisseria

16854

Vibrio

16666

Campylobacter

15931

Helicobacter

10515

Legionella

7184

Lactococcus

6239

Haemophilus

5465

Xylella

2730

Latilactobacillus

2572

Actinobacillus

1663

Ralstonia

1601

Thermus

1276

Histophilus

1182

Riemerella

1043

Aggregatibacter

1023

Agrobacterium

963

Glaesserella

956

Avibacterium

831

Porphyromonas

712

Synechocystis

619

Deinococcus

509

Bradyrhizobium

456

Synechococcus

453

Faucicola

438

Gallibacterium

310

Kingella

307

Leuconostoc

280

Azotobacter

263

Ectopseudomonas

191

Eikenella

128

Thermoactinomyces

106

Aliivibrio

96

Methanococcus

70

Cardiobacterium

60

Aquipseudomonas

51

Stutzerimonas

46

Chlorobium

24

Actinacidiphila

23

Methylobacterium

14

Thermococcus

2

Methanoculleus

1

Family

Total gene count 666435

Order

Total gene count 666435

Class

Total gene count 666435

Phylum

Total gene count 666435

Kingdom

Total gene count 666435

Domain

Total gene count 666435

Bacteria

666362

Archaea

73

This section catalogs species with documented natural transformability but without characterized transformation machinery or regulatory genes, alongside corresponding literature references. Clicking on a species name provides access to in silico predicted natural transformation machinery and regulatory genes (where available).

Species with zero predicted genes in this table are not devoid of natural transformation machinery. Instead, this result reflects the conservative design of the precomputed pipeline, which relies exclusively on BLASTp searches seeded with experimentally validated reference genes. For species lacking such experimentally characterized genes, no homologs can be retrieved by default. Users interested in these species are encouraged to perform customized searches using the online Genome prediction, BLAST, and HMMER prediction tools available on the NTDB website, where detection thresholds can be adjusted to explore more divergent homologs.

Species Number of predicted genes References (PubMed ID)
  Achromobacter arsenitoxydans insolico 0 16345673
  Aggregatibacter actinomycetemcomitans insolico 829 2229383
  Aggregatibacter aphrophilus insolico 194 2229383
  Agrobacterium tumefaciens insolico 963 11375171
  Avibacterium paragallinarum insolico 831 37212663
  Azotobacter vinelandii insolico 263 20453151
  Bacillus amyloliquefaciens insolico 9914 5541018
  Bacillus licheniformis insolico 5076 14127566, 4960110, 5802618, 5929742
  Bacillus stearothermophilus insolico 0 6277855, 6584074
  Bradyrhizobium japonicum insolico 456 5365772
  Campylobacter coli insolico 2471 16461682
  Cardiobacterium hominis insolico 60 2939687
  Chlorobium limicola insolico 24 17997281
  Chlorobium tepidum insolico 0 11375161
  Ectopseudomonas mendocina insolico 191 6571730
  Gallibacterium anatis insolico 310 22582057
  Haemophilus parainfluenzae insolico 769 475792
  Histophilus somni insolico 1182 25218867
  Lactobacillus lactis insolico 0 24509783
  Leuconostoc carnosum insolico 280 15184175
  Methanobacterium thermoautotrophicum insolico 0 3422229
  Methanococcus voltae insolico 0 3034867
  Methylobacterium organophilum insolico 14 401866
  Moraxella osloensis insolico 0 4589126
  Moraxella urethralis insolico 0 845247
  Nostoc muscorum insolico 0 1978772
  Pseudomonas alcaligenes insolico 0 6571730
  Pseudomonas fluorescens insolico 1058 11375171
  Pseudomonas pseudoalcaligenes insolico 0 6571730
  Pyrococcus furiosus insolico 0 21317259, 27824140
  Pyrococcus yayanosii insolico 0 30504216, 32602260
  Riemerella columbina insolico 20 33746928
  Streptococcus anginosus insolico 1926 9352904
  Streptococcus constellatus insolico 732 9352904
  Streptococcus cristatus insolico 372 8807795
  Streptococcus intermedius insolico 728 9352904
  Streptococcus oralis insolico 1874 3241622
  Streptococcus sanguinis insolico 665 2864407
  Streptomyces sp. insolico 0 24509783
  Synechococcus elongatus insolico 453 35958137, 7961432
  Thermoactinomyces vulgaris insolico 106 12732975
  Thermosynechococcus elongatus insolico 0 14639476
  Thermus aquaticus insolico 35 3957870
  Thermus caldophilus insolico 0 3957870
  Thermus flavus insolico 0 3957870
  Thiobacillus spp. insolico 0 6571832
  Thiobacillus thioparus insolico 0 6571832
  Vibrio vulnificus insolico 1526 19502446
  Xylella fastidiosa insolico 2730 21666009

Distribution of DNA uptake sequence (DUS)

Eight distinct DUS dialects were identified by Frye et al (PMID: 23637627). The distribution and abundance of these 8 DUS dialects were analyzed in all completely sequenced Neisseriaceae species by using the perfect match identified by BLASTn-short.

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DUS frequencies per million bp

DUS proportion within species (%)

DUS variants Sequence
AT-DUS ATGCCGTCTGAA
AG-DUS AGGCCGTCTGAA
TG-wadDUS TGCCTGTCTGAA
AG-mucDUS AGGTCGTCTGAA
AG-simDUS AGGCTGCCTGAA
AG-kingDUS AGGCAGCCTGAA
AA-king3DUS AAGCAGCCTGCA
AG-eikDUS AGGCTACCTGAA

Distribution of Uptake Signal Sequence (USS)

Two versions of USS have been described (PMID: 23637627, PMID: 17038178): version A (5'-AAGTGCGGT-3'), named Hin-USS, is found in Haemophilus influenzae (PMID: 7542802, PMID: 22753031, PMID: 6285382), Actinobacillus actinomycetemcomitans (PMID: 12057937, PMID: 17074902) and Avibacterium paragallinarum (PMID: 37212663) ; USS version B (5'-ACAAGCGGT-3'), named the Apl-USS subtype, is found in Actinobacillus pleuropneumoniae (PMID: 17038178).

The distribution and abundance of these 2 USS sequences were analyzed in all completely sequenced Pasteurellaceae species by using the perfect match identified by BLASTn-short.

Go to Download page for detailed tables.


USS frequencies per million bp

USS proportion within species (%)

USS variants Sequence
Hin-USS AAGTGCGGT
Apl-USS ACAAGCGGT