MGE detailed information
MGE type: Genomic_island MGE length: 21038 bp
Accession: NZ_CP037923 Location: 4222298..4243335 Organism: Shigella flexneri 5a str. M90T Replicon: chromosome
Accession: NZ_CP037923 Location: 4222298..4243335 Organism: Shigella flexneri 5a str. M90T Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKN05_RS21500 (EKN05_021505) | 4217411..4217746 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| EKN05_RS21505 (EKN05_021510) | 4217817..4219316 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| EKN05_RS21510 (EKN05_021515) | 4219548..4220746 | + | 1199 | Protein_4143 | NAD(P)/FAD-dependent oxidoreductase | - |
| EKN05_RS21515 (EKN05_021520) | 4221275..4221972 | + | 698 | WP_232626894.1 | IS1 family transposase | - |
| EKN05_RS21520 (EKN05_021525) | 4221990..4222282 | - | 293 | Protein_4145 | transposase | - |
| EKN05_RS21525 (EKN05_021530) | 4222298..4223572 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| EKN05_RS21530 (EKN05_021535) | 4223572..4224306 | + | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| EKN05_RS21535 (EKN05_021540) | 4224774..4225535 | + | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| EKN05_RS21540 (EKN05_021545) | 4225579..4226658 | + | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| EKN05_RS21555 (EKN05_021560) | 4228233..4229381 | + | 1149 | WP_005104238.1 | F1 capsule-anchoring protein | VF |
| EKN05_RS21560 (EKN05_021565) | 4229520..4230032 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| EKN05_RS21565 (EKN05_021570) | 4230139..4230900 | - | 762 | WP_011069549.1 | Transcriptional regulatory protein TdiR | VF |
| EKN05_RS21570 (EKN05_021575) | 4231146..4231910 | + | 765 | WP_000442144.1 | winged helix-turn-helix domain-containing protein | - |
| EKN05_RS21575 (EKN05_021580) | 4231903..4232379 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| EKN05_RS21580 (EKN05_021585) | 4232467..4233465 | - | 999 | Protein_4156 | DUF2776 family protein | - |
| EKN05_RS21585 (EKN05_021590) | 4233883..4235472 | + | 1590 | WP_024260312.1 | DUF4049 domain-containing protein | - |
| EKN05_RS21590 (EKN05_021595) | 4235734..4237356 | + | 1623 | WP_005106002.1 | DUF4049 domain-containing protein | - |
| EKN05_RS25940 | 4237546..4237659 | + | 114 | WP_001296785.1 | protein YhiY | - |
| EKN05_RS21595 (EKN05_021600) | 4237722..4238789 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| EKN05_RS21600 (EKN05_021605) | 4238786..4241521 | + | 2736 | WP_000149171.1 | Ribosome-associated ATPase | VF |
| EKN05_RS21605 (EKN05_021610) | 4241521..4242645 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| EKN05_RS21610 (EKN05_021615) | 4242704..4242979 | + | 276 | WP_001259385.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| EKN05_RS21615 (EKN05_021620) | 4242976..4243335 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| EKN05_RS21620 (EKN05_021625) | 4243455..4243856 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| EKN05_RS21625 (EKN05_021630) | 4243862..4244668 | - | 807 | WP_000173670.1 | nickel import ATP-binding protein NikE | - |
| EKN05_RS21630 (EKN05_021635) | 4244665..4245429 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| EKN05_RS21635 (EKN05_021640) | 4245429..4246262 | - | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| EKN05_RS21640 (EKN05_021645) | 4246259..4247203 | - | 945 | WP_000947077.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 2a str. 2457T | Genomic island | TA20951 | NC_004741 | 4163334..4184370 | 0.001 | |
| Shigella flexneri 2002017 | Genomic island | TA26551 | NC_017328 | 3624350..3644096 | 0.003 | |
| Shigella flexneri G1663 | Genomic island | TA45989 | NZ_CP007037 | 3579685..3596782 | 0.006 | |
| Shigella flexneri 2a strain 981 | Genomic island | TA55989 | NZ_CP012137 | 3634449..3654193 | 0.003 | |
| Shigella flexneri 4c strain 1205 | Genomic island | TA56017 | NZ_CP012140 | 3655872..3675616 | 0.003 | |
| Shigella flexneri 1a strain 0228 | Genomic island | TA57087 | NZ_CP012735 | 1329880..1350898 | 0.001 | |
| Shigella flexneri 1a strain 0670 | Genomic island | TA74001 | NZ_CP020086 | 803674..824692 | 0.001 | |
| Shigella flexneri 4c strain 1602 | Genomic island | TA74280 | NZ_CP020336 | 3734212..3753956 | 0.003 | |
| Shigella flexneri 4c strain 0702 | Genomic island | TA74303 | NZ_CP020339 | 2903299..2923043 | 0.003 | |
| Shigella flexneri 1a strain 0439 | Genomic island | TA74309 | NZ_CP020342 | 1083573..1103317 | 0.003 | |
| Shigella flexneri strain 98-3193 | Genomic island | TA95824 | NZ_CP026776 | 3273790..3295603 | 0.002 | |
| Shigella flexneri strain 74-1170 | Genomic island | TA95972 | NZ_CP026793 | 1493390..1513152 | 0.002 | |
| Shigella flexneri strain NCTC 9728 | Genomic island | TA96013 | NZ_CP026799 | 120411..141446 | 0.001 | |
| Shigella flexneri strain 89-141 | Genomic island | TA96071 | NZ_CP026803 | 4294225..4315563 | 0.004 | |
| Shigella flexneri strain SFL1520 | Genomic island | TA111885 | NZ_CP032513 | 3593062..3609698 | 0.008 | |
| Shigella flexneri strain 2016AM-0877 | Genomic island | TA113780 | NZ_CP033510 | 1849566..1869310 | 0.003 | |
| Shigella flexneri strain FDAARGOS_535 | Genomic island | TA115072 | NZ_CP034060 | 614719..636532 | 0.002 | |
| Shigella flexneri strain 2013C-3749 | Genomic island | TA116957 | NZ_CP034931 | 3868683..3888427 | 0.003 | |
| Shigella flexneri Y strain PE577 | Genomic island | TA136850 | NZ_CP042980 | 3575493..3592590 | 0.006 | |
| Shigella flexneri strain AR-0425 | Genomic island | TA140354 | NZ_CP044152 | 2856700..2877722 | 0.001 | |
| Shigella flexneri strain AR-0424 | Genomic island | TA140378 | NZ_CP044155 | 1840975..1862309 | 0.001 | |
| Shigella flexneri strain AR-0423 | Genomic island | TA140419 | NZ_CP044158 | 3875029..3894773 | 0.003 | |
| Shigella flexneri 2a strain AUSMDU00010535 | Genomic island | TA143063 | NZ_CP045941 | 357840..379652 | 0.002 | |
| Shigella flexneri strain FDAARGOS_691 | Genomic island | TA160608 | NZ_CP054913 | 280520..301870 | 0.001 | |
| Shigella flexneri strain CMCC51574 | Genomic island | TA219774 | NZ_CP084879 | 278131..299166 | 0.001 | |
| Shigella flexneri strain 3160_NCHU22 | Genomic island | TA240877 | NZ_CP094987 | 4350340..4370101 | 0.003 | |
| Shigella flexneri strain D | Genomic island | TA246300 | NZ_CP097831 | 1215075..1236888 | 0.002 | |
| Shigella flexneri strain C | Genomic island | TA246331 | NZ_CP097834 | 3688012..3709825 | 0.002 | |
| Shigella flexneri strain A | Genomic island | TA246361 | NZ_CP097840 | 1214252..1236065 | 0.002 | |
| Shigella flexneri 2a strain Sflex 21-42 | Genomic island | TA276094 | NZ_CP121223 | 1362026..1381770 | 0.003 | |
| Shigella flexneri strain AUSMDU00008355 isolate AUSMDU00008355 | Genomic island | TA288241 | NZ_LR213452 | 266960..290082 | 0.004 | |
| Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332 | Genomic island | TA288265 | NZ_LR213455 | 357852..379664 | 0.002 |