MGE detailed information
MGE type: Integron MGE length: 92221 bp
Accession: NC_012667 Location: 958376..1050596 Organism: Vibrio cholerae MJ-1236 Replicon: chromosome
Accession: NC_012667 Location: 958376..1050596 Organism: Vibrio cholerae MJ-1236 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VCD_RS18870 () | 954090..954293 | + | 204 | WP_032471619.1 | hypothetical protein | - |
| VCD_RS18875 () | 954305..954781 | + | 477 | WP_000877544.1 | hypothetical protein | - |
| VCD_RS18880 () | 954991..955332 | + | 342 | WP_002027243.1 | hypothetical protein | - |
| VCD_RS18885 () | 955642..955977 | + | 336 | WP_000978439.1 | hypothetical protein | - |
| VCD_RS18890 () | 955974..957722 | + | 1749 | WP_000063385.1 | hypothetical protein | - |
| VCD_RS18895 () | 957722..958180 | + | 459 | WP_001176612.1 | hypothetical protein | - |
| VCD_RS18900 () | 958376..958765 | - | 390 | WP_001081302.1 | hypothetical protein | - |
| VCD_RS18905 () | 958922..959839 | - | 918 | WP_000186333.1 | alpha/beta hydrolase | - |
| VCD_RS18910 () | 960073..960375 | - | 303 | WP_000229317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VCD_RS18915 () | 960363..960620 | - | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| VCD_RS18920 () | 960822..961355 | - | 534 | WP_000118351.1 | GNAT family N-acetyltransferase | Toxin Detail |
| VCD_RS21060 () | 961352..961777 | - | 426 | WP_001882332.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| VCD_RS18930 () | 961844..962215 | - | 372 | WP_001164080.1 | nucleotide pyrophosphohydrolase | - |
| VCD_RS18935 () | 962356..962643 | - | 288 | WP_000426470.1 | hypothetical protein | - |
| VCD_RS18940 () | 962795..963463 | - | 669 | WP_000043871.1 | hypothetical protein | - |
| VCD_RS18945 () | 963694..963966 | + | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| VCD_RS18950 () | 963963..964460 | + | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin Detail |
| VCD_RS18955 () | 964662..964814 | - | 153 | WP_001884520.1 | DUF645 family protein | - |
| VCD_RS18960 () | 965136..965591 | - | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
| VCD_RS18965 () | 965719..966006 | - | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VCD_RS18970 () | 965996..966247 | - | 252 | WP_001250179.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| VCD_RS18975 () | 966461..966874 | - | 414 | WP_000049417.1 | VOC family protein | - |
| VCD_RS20710 () | 966949..967092 | - | 144 | WP_071908341.1 | DUF3265 domain-containing protein | - |
| VCD_RS18980 () | 967062..967463 | - | 402 | WP_000351248.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| VCD_RS18985 () | 967463..968155 | - | 693 | WP_001047169.1 | GNAT family N-acetyltransferase | Antitoxin Detail |
| VCD_RS18990 () | 968292..968598 | - | 307 | Protein_849 | Streptogramin A acetyltransferase | VF |
| VCD_RS18995 () | 968666..969646 | + | 981 | WP_000019370.1 | IS5 family transposase ISVch5 | Transposase |
| VCD_RS19000 () | 969771..969926 | - | 156 | WP_000751734.1 | hypothetical protein | - |
| VCD_RS19005 () | 970094..970528 | - | 435 | WP_000256036.1 | GNAT family N-acetyltransferase | - |
| VCD_RS19010 () | 970665..970979 | - | 315 | WP_000071008.1 | DNA-binding transcriptional regulator | Antitoxin Detail |
| VCD_RS19015 () | 970966..971298 | - | 333 | WP_000843587.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VCD_RS20360 () | 971639..971866 | - | 228 | WP_001894457.1 | DUF1289 domain-containing protein | - |
| VCD_RS20365 () | 971815..971928 | - | 114 | WP_001889158.1 | hypothetical protein | - |
| VCD_RS20380 () | 972094..972375 | - | 282 | WP_001894453.1 | DUF1289 domain-containing protein | - |
| VCD_RS21065 () | 972324..972438 | - | 115 | Protein_858 | acetyltransferase | - |
| VCD_RS19025 () | 972495..972872 | - | 378 | WP_000411109.1 | hypothetical protein | - |
| VCD_RS19030 () | 973043..973285 | - | 243 | WP_000107461.1 | hypothetical protein | - |
| VCD_RS19035 () | 973487..973873 | - | 387 | WP_000703163.1 | VOC family protein | - |
| VCD_RS20385 () | 974082..974253 | - | 172 | Protein_862 | DUF645 family protein | - |
| VCD_RS19040 () | 974571..974840 | - | 270 | WP_001198131.1 | hypothetical protein | - |
| VCD_RS20885 () | 975200..975373 | - | 174 | WP_001882305.1 | DUF3709 domain-containing protein | - |
| VCD_RS21070 () | 975654..975857 | - | 204 | WP_001911745.1 | hypothetical protein | - |
| VCD_RS19050 () | 976144..976695 | - | 552 | WP_000821930.1 | hypothetical protein | - |
| VCD_RS19055 () | 976851..977708 | - | 858 | WP_001279526.1 | DUF2806 domain-containing protein | - |
| VCD_RS19060 () | 977855..978469 | - | 615 | WP_000789575.1 | hypothetical protein | - |
| VCD_RS20410 () | 978792..978962 | - | 171 | WP_001882300.1 | DUF645 family protein | - |
| VCD_RS19065 () | 979266..979844 | - | 579 | WP_001020575.1 | DJ-1/PfpI family protein | - |
| VCD_RS19070 () | 980095..981080 | + | 986 | Protein_871 | Sulfate-binding protein | VF |
| VCD_RS19075 () | 981463..981927 | + | 465 | WP_000140244.1 | hypothetical protein | - |
| VCD_RS19080 () | 982027..982425 | - | 399 | WP_001882293.1 | hypothetical protein | - |
| VCD_RS19085 () | 982581..983081 | - | 501 | WP_000789723.1 | hypothetical protein | - |
| VCD_RS19090 () | 983219..983749 | - | 531 | WP_000415563.1 | hypothetical protein | - |
| VCD_RS19095 () | 983900..984295 | - | 396 | WP_000649527.1 | DUF3465 domain-containing protein | - |
| VCD_RS19100 () | 984503..984928 | - | 426 | WP_000415748.1 | hypothetical protein | - |
| VCD_RS19105 () | 985200..985853 | - | 654 | WP_000036957.1 | site-specific DNA-methyltransferase | - |
| VCD_RS19120 () | 986424..986672 | + | 249 | WP_000213183.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| VCD_RS19125 () | 986662..986952 | + | 291 | WP_000221352.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VCD_RS19130 () | 987088..987603 | - | 516 | WP_001201528.1 | lipocalin family protein | - |
| VCD_RS19135 () | 987740..988216 | - | 477 | WP_001047180.1 | GNAT family N-acetyltransferase | - |
| VCD_RS20725 () | 988244..988354 | - | 111 | WP_071917832.1 | DUF3265 domain-containing protein | - |
| VCD_RS19140 () | 988351..989280 | - | 930 | WP_000335802.1 | hypothetical protein | - |
| VCD_RS19145 () | 989400..989846 | - | 447 | WP_000128977.1 | hypothetical protein | - |
| VCD_RS19150 () | 989999..991003 | - | 1005 | WP_000964925.1 | LD-carboxypeptidase | - |
| VCD_RS20895 () | 991216..991254 | - | 39 | WP_106019119.1 | hypothetical protein | - |
| VCD_RS20430 () | 991270..991395 | - | 126 | WP_001944767.1 | DUF645 family protein | - |
| VCD_RS21075 () | 991572..991682 | - | 111 | WP_134814058.1 | DUF3265 domain-containing protein | - |
| VCD_RS19160 () | 991679..991996 | - | 318 | WP_001232701.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| VCD_RS19165 () | 992007..992294 | - | 288 | WP_001162670.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VCD_RS19170 () | 992561..992741 | - | 181 | Protein_892 | DUF645 family protein | - |
| VCD_RS20440 () | 993166..993399 | - | 234 | WP_032482776.1 | DUF3709 domain-containing protein | - |
| VCD_RS19175 () | 993802..994020 | - | 219 | WP_001917086.1 | DUF3709 domain-containing protein | - |
| VCD_RS19180 () | 994330..994983 | - | 654 | WP_000226874.1 | hypothetical protein | - |
| VCD_RS19185 () | 995040..995549 | - | 510 | WP_000405987.1 | GNAT family N-acetyltransferase | - |
| VCD_RS19190 () | 995791..996033 | + | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| VCD_RS19195 () | 996052..996369 | + | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VCD_RS21080 () | 996563..996658 | - | 96 | WP_001907607.1 | DUF645 family protein | - |
| VCD_RS20905 () | 997014..997307 | - | 294 | WP_125460920.1 | hypothetical protein | - |
| VCD_RS19200 () | 997454..997801 | - | 348 | WP_000933409.1 | hypothetical protein | - |
| VCD_RS19205 () | 997950..998375 | - | 426 | WP_000403014.1 | GNAT family N-acetyltransferase | - |
| VCD_RS19210 () | 998571..998750 | - | 180 | WP_001883039.1 | DUF645 family protein | - |
| VCD_RS19220 () | 999047..999583 | - | 537 | WP_000644491.1 | nucleotidyltransferase family protein | - |
| VCD_RS19225 () | 999727..1000122 | - | 396 | WP_000046953.1 | hypothetical protein | - |
| VCD_RS20460 () | 1000299..1000480 | - | 182 | Protein_906 | DUF645 family protein | - |
| VCD_RS19230 () | 1000783..1001178 | - | 396 | WP_000046952.1 | hypothetical protein | - |
| VCD_RS19235 () | 1001431..1001709 | - | 279 | WP_000280319.1 | DUF3709 domain-containing protein | - |
| VCD_RS20915 () | 1001827..1001937 | - | 111 | Protein_909 | DUF3265 domain-containing protein | - |
| VCD_RS19240 () | 1001934..1002941 | - | 1008 | WP_000093800.1 | DUF4365 domain-containing protein | - |
| VCD_RS19250 () | 1003359..1004536 | + | 1178 | WP_086010879.1 | IS3 family transposase ISVch4 | Transposase |
| VCD_RS19255 () | 1004533..1005228 | + | 696 | WP_000213836.1 | hypothetical protein | - |
| VCD_RS19260 () | 1005289..1005795 | - | 507 | WP_001921103.1 | hypothetical protein | - |
| VCD_RS19265 () | 1005836..1006858 | - | 1023 | WP_000954291.1 | hypothetical protein | - |
| VCD_RS20470 () | 1006970..1007110 | - | 141 | WP_001883049.1 | DUF3265 domain-containing protein | - |
| VCD_RS19270 () | 1007076..1008011 | - | 936 | WP_000051985.1 | restriction endonuclease | - |
| VCD_RS19275 () | 1008292..1008891 | - | 600 | WP_000429495.1 | hypothetical protein | - |
| VCD_RS19280 () | 1009046..1009312 | - | 267 | WP_000937852.1 | hypothetical protein | - |
| VCD_RS19285 () | 1009526..1010209 | - | 684 | WP_000877436.1 | hypothetical protein | - |
| VCD_RS20480 () | 1010633..1010725 | - | 93 | WP_014164112.1 | DUF3265 domain-containing protein | - |
| VCD_RS19815 () | 1010747..1011325 | - | 579 | WP_000110120.1 | hypothetical protein | - |
| VCD_RS19300 () | 1011554..1011796 | + | 243 | WP_001107719.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| VCD_RS19305 () | 1011793..1012092 | + | 300 | WP_000802136.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VCD_RS19310 () | 1012220..1012615 | - | 396 | WP_000870857.1 | DUF3465 domain-containing protein | - |
| VCD_RS19315 () | 1012829..1013008 | - | 180 | WP_001883058.1 | DUF645 family protein | - |
| VCD_RS20490 () | 1013586..1013696 | - | 111 | WP_079857360.1 | DUF3265 domain-containing protein | - |
| VCD_RS19325 () | 1013706..1014404 | - | 699 | WP_001890502.1 | hypothetical protein | - |
| VCD_RS19330 () | 1014527..1015153 | - | 627 | WP_000365424.1 | LysE family translocator | - |
| VCD_RS20495 () | 1015195..1015287 | - | 93 | WP_014378730.1 | DUF3265 domain-containing protein | - |
| VCD_RS19335 () | 1015302..1015775 | - | 474 | WP_001161076.1 | GrpB family protein | - |
| VCD_RS19340 () | 1015975..1016157 | - | 183 | WP_000923182.1 | DUF645 family protein | - |
| VCD_RS19345 () | 1016549..1017145 | - | 597 | WP_000255434.1 | hypothetical protein | - |
| VCD_RS19350 () | 1017210..1017725 | - | 516 | WP_001201520.1 | lipocalin family protein | - |
| VCD_RS19355 () | 1017920..1018204 | + | 285 | WP_000381183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| VCD_RS19360 () | 1018201..1018479 | + | 279 | WP_000578476.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| VCD_RS19365 () | 1018630..1019043 | - | 414 | WP_000049420.1 | VOC family protein | - |
| VCD_RS19370 () | 1019231..1019710 | - | 480 | WP_000009888.1 | lecithin retinol acyltransferase family protein | - |
| VCD_RS19375 () | 1019923..1020546 | - | 624 | WP_000247070.1 | DUF1349 domain-containing protein | - |
| VCD_RS19380 () | 1020752..1021177 | - | 426 | WP_000415750.1 | hypothetical protein | - |
| VCD_RS20510 () | 1021324..1021473 | - | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| VCD_RS19385 () | 1021446..1021697 | - | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| VCD_RS19390 () | 1021892..1022095 | - | 204 | WP_001911580.1 | hypothetical protein | - |
| VCD_RS19395 () | 1022352..1022738 | - | 387 | WP_000703163.1 | VOC family protein | - |
| VCD_RS19400 () | 1022895..1023401 | - | 507 | WP_000393074.1 | hypothetical protein | - |
| VCD_RS19405 () | 1023669..1023902 | - | 234 | WP_001890112.1 | DUF3709 domain-containing protein | - |
| VCD_RS19410 () | 1024175..1024534 | - | 360 | WP_001071541.1 | VOC family protein | - |
| VCD_RS19415 () | 1024687..1025691 | - | 1005 | WP_000964920.1 | LD-carboxypeptidase | - |
| VCD_RS19420 () | 1025907..1026089 | - | 183 | WP_000923182.1 | DUF645 family protein | - |
| VCD_RS21085 () | 1026150..1026278 | - | 129 | WP_071908338.1 | general secretion pathway protein GspI | - |
| VCD_RS19425 () | 1026381..1027175 | - | 795 | WP_001911581.1 | hypothetical protein | - |
| VCD_RS19430 () | 1027271..1027516 | - | 246 | WP_000643598.1 | hypothetical protein | Antitoxin Detail |
| VCD_RS19435 () | 1027503..1027769 | - | 267 | WP_000589156.1 | BrnT family toxin | Toxin Detail |
| VCD_RS19440 () | 1027954..1028616 | - | 663 | WP_000960654.1 | hypothetical protein | - |
| VCD_RS19445 () | 1028744..1029211 | - | 468 | WP_001289288.1 | OsmC family protein | - |
| VCD_RS21090 () | 1029423..1029461 | - | 39 | WP_082798268.1 | hypothetical protein | - |
| VCD_RS21095 () | 1029515..1029658 | - | 144 | Protein_956 | DUF645 family protein | - |
| VCD_RS19455 () | 1030033..1030311 | - | 279 | WP_000280324.1 | DUF3709 domain-containing protein | - |
| VCD_RS19460 () | 1030563..1030805 | - | 243 | WP_000107461.1 | hypothetical protein | - |
| VCD_RS20550 () | 1030897..1031046 | - | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| VCD_RS19465 () | 1031019..1031270 | - | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| VCD_RS19470 () | 1031465..1031851 | - | 387 | WP_000703163.1 | VOC family protein | - |
| VCD_RS20935 () | 1031841..1031942 | - | 102 | WP_001921603.1 | hypothetical protein | - |
| VCD_RS20940 () | 1032142..1032348 | - | 207 | Protein_963 | DUF3709 domain-containing protein | - |
| VCD_RS20560 () | 1032600..1032878 | - | 279 | WP_001921601.1 | DUF3709 domain-containing protein | - |
| VCD_RS19480 () | 1033164..1033442 | + | 279 | WP_001258569.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| VCD_RS19485 () | 1033435..1033704 | + | 270 | WP_000277238.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| VCD_RS19490 () | 1033852..1034298 | - | 447 | WP_000006157.1 | hypothetical protein | - |
| VCD_RS20945 () | 1034494..1034532 | - | 39 | WP_106019118.1 | hypothetical protein | - |
| VCD_RS20795 () | 1034548..1034673 | - | 126 | WP_001900195.1 | DUF645 family protein | - |
| VCD_RS19500 () | 1035066..1035338 | + | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| VCD_RS19505 () | 1035335..1035832 | + | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin Detail |
| VCD_RS19510 () | 1035982..1036497 | - | 516 | WP_001201509.1 | lipocalin family protein | - |
| VCD_RS19515 () | 1036634..1037170 | - | 537 | WP_000469482.1 | GNAT family N-acetyltransferase | - |
| VCD_RS19525 () | 1037428..1037709 | - | 282 | WP_001894429.1 | DUF1289 domain-containing protein | - |
| VCD_RS20575 () | 1037658..1037771 | - | 114 | WP_001900214.1 | hypothetical protein | - |
| VCD_RS19530 () | 1037828..1038214 | - | 387 | WP_001015867.1 | NUDIX hydrolase | - |
| VCD_RS19535 () | 1038458..1038700 | + | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| VCD_RS19540 () | 1038719..1039036 | + | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VCD_RS19545 () | 1039190..1039528 | - | 339 | WP_000713853.1 | hypothetical protein | - |
| VCD_RS19550 () | 1039686..1040390 | - | 705 | WP_000087610.1 | HNH endonuclease | - |
| VCD_RS19555 () | 1040552..1041760 | - | 1209 | WP_000272282.1 | deoxyguanosinetriphosphate triphosphohydrolase family protein | - |
| VCD_RS19560 () | 1041922..1042599 | - | 678 | WP_000254617.1 | HNH endonuclease | - |
| VCD_RS19565 () | 1042794..1042976 | - | 183 | WP_000923153.1 | DUF645 family protein | - |
| VCD_RS19575 () | 1043330..1043512 | - | 183 | WP_000923340.1 | DUF645 family protein | - |
| VCD_RS19580 () | 1043808..1044185 | - | 378 | WP_000411106.1 | hypothetical protein | - |
| VCD_RS19585 () | 1044390..1044572 | - | 183 | WP_000923334.1 | DUF645 family protein | - |
| VCD_RS20585 () | 1044597..1044776 | - | 180 | WP_001203705.1 | hypothetical protein | - |
| VCD_RS19590 () | 1044874..1045626 | - | 753 | WP_000116045.1 | putative oxidoreductase YgfF | VF |
| VCD_RS19595 () | 1045782..1046411 | - | 630 | WP_001009012.1 | Chloramphenicol acetyltransferase | VF |
| VCD_RS19600 () | 1046562..1046993 | - | 432 | WP_000795498.1 | hypothetical protein | - |
| VCD_RS20590 () | 1047024..1047173 | - | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| VCD_RS19605 () | 1047146..1047397 | - | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| VCD_RS19610 () | 1047653..1047835 | - | 183 | WP_000923182.1 | DUF645 family protein | - |
| VCD_RS21100 () | 1048499..1048588 | - | 90 | WP_072615218.1 | DUF3265 domain-containing protein | - |
| VCD_RS19620 () | 1048632..1048958 | - | 327 | WP_001921550.1 | hypothetical protein | - |
| VCD_RS20605 () | 1048987..1049154 | - | 168 | WP_001883086.1 | DUF3265 domain-containing protein | - |
| VCD_RS19625 () | 1049634..1050596 | + | 963 | WP_000841995.1 | IS91 family transposase ISAzo26 | Transposase |
| VCD_RS19630 () | 1050678..1051031 | - | 354 | WP_001138366.1 | 50S ribosomal protein L20 | - |
| VCD_RS19635 () | 1051073..1051267 | - | 195 | WP_001885060.1 | 50S ribosomal protein L35 | - |
| VCD_RS19640 () | 1051371..1051922 | - | 552 | WP_001894072.1 | translation initiation factor IF-3 | - |
| VCD_RS19645 () | 1051926..1053854 | - | 1929 | WP_001121779.1 | threonine--tRNA ligase | - |
| VCD_RS21105 () | 1054123..1054350 | - | 228 | WP_001911595.1 | hypothetical protein | - |
| VCD_RS19655 () | 1054475..1055146 | - | 672 | WP_000132861.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Vibrio cholerae O1 biovar El Tor str. N16961 | Integron | TA164, TA169, TA166, TA167, TA179, TA170, TA171, TA172, TA173, TA174, TA175, TA176, TA177, TA178, TA168, TA165, TA10030, TA10035 | NC_002506 | 309750..435387 | 0.006 |