Detailed information NTG0993861

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AAEQ75_RS12445
• Genome accession: NZ_CP154631
• Coordinates: 2632136..2632321 (+)
• Length: 61 a.a.
• NCBI ID: WP_343349101.1
• Uniprot ID: -
• Organism: Pseudomonas sediminis strain I4
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2627136..2637321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAEQ75_RS12425 (AAEQ75_12425)	coaE	2627324..2627932 (-)	609	WP_343349093.1	dephospho-CoA kinase	-
AAEQ75_RS12430 (AAEQ75_12430)	pilD	2628110..2628976 (-)	867	WP_343349095.1	A24 family peptidase	Machinery gene
AAEQ75_RS12435 (AAEQ75_12435)	pilC	2628980..2630200 (-)	1221	WP_343349097.1	type II secretion system F family protein	Machinery gene
AAEQ75_RS12440 (AAEQ75_12440)	pilB	2630204..2631904 (-)	1701	WP_343349099.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAEQ75_RS12445 (AAEQ75_12445)	pilA	2632136..2632321 (+)	186	WP_343349101.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
AAEQ75_RS12450 (AAEQ75_12450)	-	2632333..2632776 (+)	444	WP_343349103.1	hypothetical protein	-
AAEQ75_RS12455 (AAEQ75_12455)	-	2632878..2633033 (+)	156	WP_343349105.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AAEQ75_RS12460 (AAEQ75_12460)	-	2633095..2633901 (+)	807	WP_343349106.1	hypothetical protein	-
AAEQ75_RS12465 (AAEQ75_12465)	-	2633904..2634743 (+)	840	WP_343352379.1	hypothetical protein	-
AAEQ75_RS12470 (AAEQ75_12470)	-	2634740..2635651 (+)	912	WP_343349108.1	ABC transporter ATP-binding protein	-
AAEQ75_RS12475 (AAEQ75_12475)	-	2635905..2636303 (+)	399	WP_343349110.1	nucleotidyltransferase domain-containing protein	-
AAEQ75_RS12480 (AAEQ75_12480)	-	2636293..2636715 (+)	423	WP_143506146.1	DUF86 domain-containing protein	-

Sequence

Protein

• Length: 61 a.a.
• Molecular weight: 6608.86 Da
• Isoelectric Point: 10.2806

>NTDB_id=993861 AAEQ75_RS12445 WP_343349101.1 2632136..2632321(+) (pilA) [Pseudomonas sediminis strain I4]
MKSLKKQKGFTLIELMIVVAIIGILAAIAIPQFNEYRAKSNDTVSNADTKNTLTVMAAAQL

Nucleotide

• Length: 186 bp

>NTDB_id=993861 AAEQ75_RS12445 WP_343349101.1 2632136..2632321(+) (pilA) [Pseudomonas sediminis strain I4]
ATGAAGTCTCTGAAGAAGCAAAAGGGTTTTACCCTGATCGAGCTGATGATCGTAGTCGCCATCATCGGTATTCTGGCTGC
TATCGCCATTCCGCAGTTCAATGAATATCGCGCCAAGTCCAACGATACCGTCTCTAATGCGGATACTAAAAATACTCTGA
CCGTTATGGCTGCTGCTCAGCTCTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Ralstonia pseudosolanacearum GMI1000	59.615	85.246	0.508
pilA	Vibrio parahaemolyticus RIMD 2210633	60	81.967	0.492
pilA	Acinetobacter baumannii strain A118	81.081	60.656	0.492
pilA	Pseudomonas aeruginosa PAK	78.947	62.295	0.492
pilA2	Legionella pneumophila strain ERS1305867	65.217	75.41	0.492
pilA2	Legionella pneumophila str. Paris	65.217	75.41	0.492
pilA/pilA1	Eikenella corrodens VA1	70.732	67.213	0.475
pilA	Acinetobacter nosocomialis M2	78.378	60.656	0.475
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	77.778	59.016	0.459
pilA	Vibrio cholerae strain A1552	77.778	59.016	0.459
pilA	Vibrio cholerae C6706	77.778	59.016	0.459
pilA/pilAI	Pseudomonas stutzeri DSM 10701	77.143	57.377	0.443
pilA	Vibrio campbellii strain DS40M4	75	59.016	0.443
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	67.5	65.574	0.443
pilV	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	50.943	86.885	0.443
pilA/pilAII	Pseudomonas stutzeri DSM 10701	63.415	67.213	0.426
pilA/pilA4	Thermus thermophilus HB27	58.537	67.213	0.393
comF	Acinetobacter baylyi ADP1	63.158	62.295	0.393
pilE	Legionella pneumophila strain ERS1305867	44.231	85.246	0.377
pilE	Legionella pneumophila str. Paris	44.231	85.246	0.377
pilA	Haemophilus influenzae 86-028NP	67.647	55.738	0.377
pilE	Neisseria gonorrhoeae MS11	67.647	55.738	0.377
pilE	Neisseria gonorrhoeae strain FA1090	67.647	55.738	0.377
pilA	Haemophilus influenzae Rd KW20	67.647	55.738	0.377
comE	Acinetobacter baylyi ADP1	62.162	60.656	0.377
pilA	Glaesserella parasuis strain SC1401	66.667	54.098	0.361
pilL	Neisseria gonorrhoeae MS11	62.857	57.377	0.361