Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAEQ75_RS12430 | Genome accession | NZ_CP154631 |
| Coordinates | 2628110..2628976 (-) | Length | 288 a.a. |
| NCBI ID | WP_343349095.1 | Uniprot ID | - |
| Organism | Pseudomonas sediminis strain I4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2623110..2633976
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAEQ75_RS12395 (AAEQ75_12395) | - | 2624362..2624535 (-) | 174 | WP_343349082.1 | DUF3094 family protein | - |
| AAEQ75_RS12400 (AAEQ75_12400) | - | 2624696..2625250 (-) | 555 | WP_343349084.1 | MOSC domain-containing protein | - |
| AAEQ75_RS12405 (AAEQ75_12405) | - | 2625247..2625876 (-) | 630 | WP_125880112.1 | DUF1780 domain-containing protein | - |
| AAEQ75_RS12410 (AAEQ75_12410) | - | 2626074..2626763 (+) | 690 | WP_343349088.1 | energy-coupling factor ABC transporter permease | - |
| AAEQ75_RS12415 (AAEQ75_12415) | - | 2626870..2627085 (+) | 216 | WP_343349090.1 | hypothetical protein | - |
| AAEQ75_RS12420 (AAEQ75_12420) | yacG | 2627133..2627327 (-) | 195 | WP_256835435.1 | DNA gyrase inhibitor YacG | - |
| AAEQ75_RS12425 (AAEQ75_12425) | coaE | 2627324..2627932 (-) | 609 | WP_343349093.1 | dephospho-CoA kinase | - |
| AAEQ75_RS12430 (AAEQ75_12430) | pilD | 2628110..2628976 (-) | 867 | WP_343349095.1 | A24 family peptidase | Machinery gene |
| AAEQ75_RS12435 (AAEQ75_12435) | pilC | 2628980..2630200 (-) | 1221 | WP_343349097.1 | type II secretion system F family protein | Machinery gene |
| AAEQ75_RS12440 (AAEQ75_12440) | pilB | 2630204..2631904 (-) | 1701 | WP_343349099.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAEQ75_RS12445 (AAEQ75_12445) | pilA | 2632136..2632321 (+) | 186 | WP_343349101.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| AAEQ75_RS12450 (AAEQ75_12450) | - | 2632333..2632776 (+) | 444 | WP_343349103.1 | hypothetical protein | - |
| AAEQ75_RS12455 (AAEQ75_12455) | - | 2632878..2633033 (+) | 156 | WP_343349105.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| AAEQ75_RS12460 (AAEQ75_12460) | - | 2633095..2633901 (+) | 807 | WP_343349106.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31748.69 Da Isoelectric Point: 5.6551
>NTDB_id=993858 AAEQ75_RS12430 WP_343349095.1 2628110..2628976(-) (pilD) [Pseudomonas sediminis strain I4]
MVFEFLADNLSAFVFVCAIFGLLIGSFLNVVVYRLPLMLQRDWQAQAREILELPSAPPTGTFNLVLPNSSCPDCGHEIKP
WENIPVISYLFLRGKCSNCKTPISKRYPIVELTCGLLSAYVAWHFGFTWQAGAMLVLAWGLLAMSLIDADHQILPDVLVL
PLLWLGLIVNYFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA
VLGVIMLRMRGSDSGTPIPFGPYLAIAGWIALLWGDVITGSYLKFAGF
MVFEFLADNLSAFVFVCAIFGLLIGSFLNVVVYRLPLMLQRDWQAQAREILELPSAPPTGTFNLVLPNSSCPDCGHEIKP
WENIPVISYLFLRGKCSNCKTPISKRYPIVELTCGLLSAYVAWHFGFTWQAGAMLVLAWGLLAMSLIDADHQILPDVLVL
PLLWLGLIVNYFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA
VLGVIMLRMRGSDSGTPIPFGPYLAIAGWIALLWGDVITGSYLKFAGF
Nucleotide
Download Length: 867 bp
>NTDB_id=993858 AAEQ75_RS12430 WP_343349095.1 2628110..2628976(-) (pilD) [Pseudomonas sediminis strain I4]
ATGGTGTTCGAATTTCTGGCCGACAATCTGTCGGCCTTTGTTTTTGTCTGTGCGATTTTCGGTCTACTGATCGGCAGCTT
CCTCAATGTCGTGGTTTATCGCCTACCGCTGATGCTGCAGCGCGATTGGCAAGCCCAAGCCCGGGAGATACTGGAGTTGC
CATCAGCCCCTCCCACAGGAACCTTCAATCTTGTTCTACCCAACTCTTCGTGCCCTGATTGTGGCCATGAGATAAAGCCC
TGGGAGAACATCCCAGTCATCAGCTATCTGTTTCTGCGCGGCAAGTGTTCGAACTGCAAGACCCCGATCAGCAAGCGTTA
CCCCATTGTCGAACTGACCTGCGGGCTGCTTTCCGCTTACGTCGCCTGGCATTTCGGTTTCACCTGGCAGGCCGGGGCGA
TGCTGGTGCTGGCCTGGGGGCTGCTGGCGATGAGCCTGATCGATGCTGATCACCAGATTCTGCCCGACGTGCTGGTGCTG
CCTCTGCTGTGGCTGGGCTTGATCGTCAATTACTTCGGGCTTTTCACCAGCCTGGAAGATGCACTGTGGGGGGCGATTGC
CGGTTATCTCAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGTTACGGTGATTTCA
AGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACCATTCTGCTGTCGTCGCTGGTCGGGGCG
GTGCTCGGGGTCATCATGCTGCGCATGCGCGGCAGCGATTCCGGCACGCCGATTCCCTTTGGCCCTTATCTGGCGATTGC
CGGGTGGATCGCCCTGCTGTGGGGTGATGTGATTACCGGCAGTTATCTGAAGTTCGCCGGTTTTTGA
ATGGTGTTCGAATTTCTGGCCGACAATCTGTCGGCCTTTGTTTTTGTCTGTGCGATTTTCGGTCTACTGATCGGCAGCTT
CCTCAATGTCGTGGTTTATCGCCTACCGCTGATGCTGCAGCGCGATTGGCAAGCCCAAGCCCGGGAGATACTGGAGTTGC
CATCAGCCCCTCCCACAGGAACCTTCAATCTTGTTCTACCCAACTCTTCGTGCCCTGATTGTGGCCATGAGATAAAGCCC
TGGGAGAACATCCCAGTCATCAGCTATCTGTTTCTGCGCGGCAAGTGTTCGAACTGCAAGACCCCGATCAGCAAGCGTTA
CCCCATTGTCGAACTGACCTGCGGGCTGCTTTCCGCTTACGTCGCCTGGCATTTCGGTTTCACCTGGCAGGCCGGGGCGA
TGCTGGTGCTGGCCTGGGGGCTGCTGGCGATGAGCCTGATCGATGCTGATCACCAGATTCTGCCCGACGTGCTGGTGCTG
CCTCTGCTGTGGCTGGGCTTGATCGTCAATTACTTCGGGCTTTTCACCAGCCTGGAAGATGCACTGTGGGGGGCGATTGC
CGGTTATCTCAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGTTACGGTGATTTCA
AGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACCATTCTGCTGTCGTCGCTGGTCGGGGCG
GTGCTCGGGGTCATCATGCTGCGCATGCGCGGCAGCGATTCCGGCACGCCGATTCCCTTTGGCCCTTATCTGGCGATTGC
CGGGTGGATCGCCCTGCTGTGGGGTGATGTGATTACCGGCAGTTATCTGAAGTTCGCCGGTTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter baumannii D1279779 |
52.113 |
98.611 |
0.514 |
| pilD | Vibrio cholerae strain A1552 |
54.412 |
94.444 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
51.761 |
98.611 |
0.51 |
| pilD | Vibrio campbellii strain DS40M4 |
52.941 |
94.444 |
0.5 |
| pilD | Neisseria gonorrhoeae MS11 |
49.237 |
90.972 |
0.448 |