Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAEQ75_RS12435 Genome accession   NZ_CP154631
Coordinates   2628980..2630200 (-) Length   406 a.a.
NCBI ID   WP_343349097.1    Uniprot ID   -
Organism   Pseudomonas sediminis strain I4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2623980..2635200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEQ75_RS12395 (AAEQ75_12395) - 2624362..2624535 (-) 174 WP_343349082.1 DUF3094 family protein -
  AAEQ75_RS12400 (AAEQ75_12400) - 2624696..2625250 (-) 555 WP_343349084.1 MOSC domain-containing protein -
  AAEQ75_RS12405 (AAEQ75_12405) - 2625247..2625876 (-) 630 WP_125880112.1 DUF1780 domain-containing protein -
  AAEQ75_RS12410 (AAEQ75_12410) - 2626074..2626763 (+) 690 WP_343349088.1 energy-coupling factor ABC transporter permease -
  AAEQ75_RS12415 (AAEQ75_12415) - 2626870..2627085 (+) 216 WP_343349090.1 hypothetical protein -
  AAEQ75_RS12420 (AAEQ75_12420) yacG 2627133..2627327 (-) 195 WP_256835435.1 DNA gyrase inhibitor YacG -
  AAEQ75_RS12425 (AAEQ75_12425) coaE 2627324..2627932 (-) 609 WP_343349093.1 dephospho-CoA kinase -
  AAEQ75_RS12430 (AAEQ75_12430) pilD 2628110..2628976 (-) 867 WP_343349095.1 A24 family peptidase Machinery gene
  AAEQ75_RS12435 (AAEQ75_12435) pilC 2628980..2630200 (-) 1221 WP_343349097.1 type II secretion system F family protein Machinery gene
  AAEQ75_RS12440 (AAEQ75_12440) pilB 2630204..2631904 (-) 1701 WP_343349099.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAEQ75_RS12445 (AAEQ75_12445) pilA 2632136..2632321 (+) 186 WP_343349101.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AAEQ75_RS12450 (AAEQ75_12450) - 2632333..2632776 (+) 444 WP_343349103.1 hypothetical protein -
  AAEQ75_RS12455 (AAEQ75_12455) - 2632878..2633033 (+) 156 WP_343349105.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AAEQ75_RS12460 (AAEQ75_12460) - 2633095..2633901 (+) 807 WP_343349106.1 hypothetical protein -
  AAEQ75_RS12465 (AAEQ75_12465) - 2633904..2634743 (+) 840 WP_343352379.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44425.15 Da        Isoelectric Point: 9.7877

>NTDB_id=993859 AAEQ75_RS12435 WP_343349097.1 2628980..2630200(-) (pilC) [Pseudomonas sediminis strain I4]
MAEKALKTSVFAWEGTDRKGGKIKGEISGQSPALVKAQLRKQGINPLKVRKKAVSLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPNMRKLIDEIKQEVAAGNSFATSLRKKPMYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVVVVAVIVTAILLIKVVPQFESVFEGFGAQLPAFTMVVVNLSRWLQEWWFLVLFAIFISIYSFG
QAYKRSEKFRDSLDRALLKAPIVGPILYKAVVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVNRIKNDVSSGT
QLNFSMRNTGIFPTMAVQMTAIGEEAGSLDEMLDKTASYYEEEVDNAVDNLTTLMEPLIMSVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=993859 AAEQ75_RS12435 WP_343349097.1 2628980..2630200(-) (pilC) [Pseudomonas sediminis strain I4]
ATGGCGGAAAAAGCACTGAAAACCAGCGTATTCGCCTGGGAAGGTACCGACAGAAAAGGCGGCAAGATCAAAGGAGAGAT
CTCCGGCCAATCTCCCGCACTGGTCAAGGCCCAACTGCGCAAGCAGGGCATCAACCCGCTCAAGGTGCGTAAAAAGGCAG
TTTCCCTTTTCAGCGCGGGCAAGAAGATCAAGCCGATGGATATCGCCTTGTTCACCCGCCAGATGGCCACCATGATGAAA
GCTGGCGTGCCACTGCTGCAGTCGTTCGACATCATCGCCGAAGGCTTCGACAACCCGAACATGCGCAAGCTGATCGACGA
GATCAAGCAGGAAGTAGCTGCGGGCAATAGCTTCGCCACCTCGCTACGTAAAAAGCCGATGTATTTCGATGACTTGTACT
GCAACCTGGTCGACTCCGGCGAACAGTCCGGTGCCCTGGAAACCTTGCTCGACAGGGTCGCCACCTATAAGGAAAAAACC
GAAGCGCTGAAAGCCAAGATCAAGAAGGCCATGACCTACCCTATTGCGGTAGTCGTGGTGGCAGTGATCGTCACGGCGAT
TCTGTTGATCAAGGTCGTACCGCAGTTCGAGAGCGTATTCGAAGGCTTTGGCGCACAGCTCCCTGCCTTTACGATGGTGG
TGGTCAACCTTTCCAGATGGCTGCAGGAGTGGTGGTTCCTGGTACTGTTCGCGATCTTTATCTCGATCTACAGCTTCGGC
CAGGCATACAAACGCTCGGAGAAGTTCCGCGACTCGCTAGACCGAGCGCTGCTCAAAGCCCCCATCGTTGGCCCCATTCT
GTACAAGGCTGTAGTCGCGCGCTTTGCTCGAACCCTGGCAACCACGTTTGCTGCTGGCGTACCACTGGTTGACGCGCTGG
ACTCTGTGGCGGGCGCGACCGGCAACGTGGTGTTTCGCAATGCGGTCAACCGAATCAAGAACGATGTTTCATCAGGCACG
CAGCTCAACTTCTCCATGCGCAACACCGGCATTTTCCCAACCATGGCCGTACAGATGACCGCCATCGGTGAAGAGGCCGG
TTCTCTGGATGAAATGCTGGATAAAACCGCCAGTTACTATGAAGAAGAAGTGGACAACGCGGTTGATAACCTCACCACGC
TGATGGAGCCACTGATCATGTCCGTGCTTGGGGTATTGGTCGGCGGCCTGATCATCGCCATGTATCTCCCAATCTTCCAA
CTCGGCTCGGTGGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.741

99.754

0.805
  pilC Acinetobacter baylyi ADP1

61.576

100

0.616
  pilC Acinetobacter baumannii D1279779

60.988

99.754

0.608
  pilC Legionella pneumophila strain ERS1305867

55.051

97.537

0.537
  pilG Neisseria gonorrhoeae MS11

44.776

99.015

0.443
  pilG Neisseria meningitidis 44/76-A

44.776

99.015

0.443
  pilC Vibrio cholerae strain A1552

42.857

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.96

98.03

0.411

Multiple sequence alignment