TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Toxin (Protein)
| Predicted family | yoeB (T1043) | Predicted domain | PF06769 (YoeB) |
| Locus tag | orf1749 | Length | 84 a.a. |
| Coordinates | 1869615..1869869 (+) |
Antitoxin (Protein)
| Predicted family | yefM (AT1043) | Predicted domain | PRK11409 (YefM) |
| Locus tag | orf1748 | Length | 83 a.a. |
| Coordinates | 1869367..1869618 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf1744 | 1864545..1865612 | - | 1068 | ORF1744 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1745 | 1865612..1866682 | - | 1071 | ORF1745 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1746 | 1866679..1867983 | - | 1305 | ORF1746 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1747 | 1867989..1868888 | - | 900 | ORF1747 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1748 | 1869367..1869618 | + | 252 | ORF1748 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf1749 | 1869615..1869869 | + | 255 | ORF1749 | Predicted ORF by PRODIGAL Version 1.20 | Toxin |
| orf1750 | 1869952..1870776 | + | 825 | ORF1750 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1751 | 1870822..1871751 | + | 930 | ORF1751 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1752 | 1872018..1873376 | + | 1359 | ORF1752 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1753 | 1873609..1874613 | + | 1005 | ORF1753 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1754 | 1874627..1874854 | + | 228 | ORF1754 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Toxin
PF06769 (YoeB) (E-value: 1.6e-44, Score:147.8)
TIGR02116 (Txe) (E-value: 5.6e-41, Score:136.7)
COG4115 (Txe) (E-value: 9.7e-37, Score:123)
TIGR02385 (RelE) (E-value: 9.6e-07, Score:27.3)
TIGR00053 (YafQ) (E-value: 5e-06, Score:25.1)
PF05015 (HigB) (E-value: 0.018, Score:13.5)
PF05016 (ParE) (E-value: 0.023, Score:13.2)
COG3549 (HigB) (E-value: 0.025, Score:12.9)
Antitoxin
PRK11409 (YefM) (E-value: 9.6e-56, Score:183.9)
PF12910 (RelB) (E-value: 2.6e-37, Score:125)
PF02604 (YefM) (E-value: 4.6e-13, Score:47.1)
TIGR01552 (Phd) (E-value: 5.5e-10, Score:37)
COG2161 (YafN) (E-value: 5.2e-05, Score:21.2)
PRK04217 (E-value: 0.041, Score:12)
Sequences
Toxin
Download Length: 84 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRI
TEEHRLVYAVTDDSLLIAACRYHY
Download Length: 255 bp
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGAT
AAGCGAATTGTTAAAAAGATCAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAA
GGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAGGTTTCTGGTCCCGACGCATT
ACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPAN
ARRLMDSIDSLKSGKGTEKDIIE
Download Length: 252 bp
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCC
GTTGAAGATCATGCCCCGATCCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATG
TCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATCTACTGCGTTCCCCCGCTAAC
GCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACAGAAAAGGAC
ATTATTGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.