Agrobacterium fabrum str. C58



NC_003063 (chromosome)
 

NC_003064 (plasmid At)
 

NC_003062 (chromosome)
 

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T6SS ID
Type
Organism
Replicon (Accession)
Location
Function
T6SS00016 experimentali5Agrobacterium fabrum str. C58chromosome linear (NC_003063)1460756..1488734anti-eukaryotic; anti-bacterial; effector translocation
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Regulator ID
Locus tag (Gene)
Related T6SS
Regulator type
Regulatory pathway
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
Target (Regulation)
REG0077 experimentalAtu4335 (Fha/TagH)T6SS00016 experimentalproteinTppAgrobacterium fabrum str. C58chromosome (NC_003063)1467064..1468263 (-)499280697Unknown (↓)
REG0078 experimentalAtu4330 (PpkA)T6SS00016 experimentalproteinTppAgrobacterium fabrum str. C58chromosome (NC_003063)1458366..1459271 (-)737274050Unknown (↓)
REG0079 experimentalAtu4331 (TagF-PppA)T6SS00016 experimentalproteinTppAgrobacterium fabrum str. C58chromosome (NC_003063)1459258..1460673 (-)159186120Fha (Atu4335) (↑)
REG0080 experimentalAtu2091T6SS00016 experimentalproteinc-di-GMP regulatory pathwayAgrobacterium fabrum str. C58chromosome (NC_003063)2054055..2054864 (-)159185045the levels of c-di-GMP (↑)
REG0081 experimentalAtu5372T6SS00016 experimentalproteinc-di-GMP regulatory pathwayAgrobacterium fabrum str. C58chromosome (NC_003064)363293..364387 (+)1805892863the levels of c-di-GMP (↑)
REG0082 experimentalAtu1257 (DgcA)T6SS00016 experimentalproteinc-di-GMP regulatory pathwayAgrobacterium fabrum str. C58chromosome (NC_003062)1244567..1245814 (-)159184686the levels of c-di-GMP (↑)
REG0083 experimentalAtu2179 (DgcC)T6SS00016 experimentalproteinc-di-GMP regulatory pathwayAgrobacterium fabrum str. C58chromosome (NC_003062)2154605..2155744 (-)159185090the levels of c-di-GMP (↑)
REG0084 experimentalchvGT6SS00016 experimentalproteinTCS-HKAgrobacterium fabrum str. C58chromosome (NC_003062)34679..36469 (-)chvI (↓)
REG0085 experimentalchvIT6SS00016 experimentalproteinTCS-RRAgrobacterium fabrum str. C58chromosome (NC_003062)36525..37250 (-)The intergenic region of the imp and hcp operons (↓)
REG0086 experimentalexoRT6SS00016 experimentalproteinTCS regulatory pathwayAgrobacterium fabrum str. C58chromosome (NC_003062)1702398..1703192 (-)chvG (↑)
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experimental Experimental investigation has been performed.
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Effector ID
Locus tag (Gene)
Classification
Cognate immunity protein
Related T6SS
Organism                
Replicon (Accession)
Coordinates (Strand)
NCBI ID
EFF00996 experimentalAtu4347 (Tae4)TaeIMU00053 experimental; IMU00192 experimentalT6SS00016 experimentalAgrobacterium fabrum str. C58chromosome (NC_003063)1480980..1481480 (+)159186127
EFF01308 experimentalAtu4350 (Tde1)Tde-T6SS00016 experimentalAgrobacterium fabrum str. C58chromosome (NC_003063)1484901..1485737 (+)15890633
EFF01307 experimentalAtu3640 (Tde2)TdeIMU00054 experimentalT6SS00016 experimentalAgrobacterium fabrum str. C58chromosome (NC_003063)692241..693821 (-)15891300
EFF00024 experimentalATU_RS20350--T6SS00016 experimentalAgrobacterium fabrum str. C58chromosome (NC_003063)1479996..1480472 (+)15890638
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Immunity protein ID
Locus tag (Gene)
Related T6SS
Organism                
Replicon (Accession)
Coordinates (Strand)
Protein GI
Cognate effector
IMU00053 experimentalAtu4351 (Tdi1)T6SS00016 experimentalAgrobacterium fabrum str. C58chromosome (NC_003063)1485765..1486439 (+)15890632EFF00024 experimental
IMU00054 experimentalAtu3639 (Tdi2)T6SS00016 experimentalAgrobacterium fabrum str. C58chromosome (NC_003063)691507..692238 (-)159185838EFF00024 experimental
IMU00192 experimentalAtu4346 (Tai4)T6SS00016 experimentalAgrobacterium fabrum str. C58chromosome (NC_003063)1480579..1480968 (+)159186126EFF00024 experimental
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ID          
Locus tag (Gene)
Organism                
Replicon (Accession)
Coordinates (Strand)
Protein GI
Response to T6SS attack
Known or putative function
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Accessory protein ID
Locus tag (Gene)
Related T6SS
Type            
Organism                
Replicon (Accession)
Coordinates (Strand)
Protein GI
Related structure protein
Related effector
ACP00010 experimentalAtu4349 (tap-1)T6SS00016 experimentaladaptorAgrobacterium fabrum str. C58chromosome (NC_003063)1483948..1484904 (+)737273750Atu4348 (VgrG1)Atu4350 (Tde1)
ACP00011 experimentalAtu3641T6SS00016 experimentaladaptorAgrobacterium fabrum str. C58chromosome (NC_003063)693818..694927 (-)499279473Atu3642 (VgrG2)Atu3640 (Tde2)
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