Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   GWG10_RS23285 Genome accession   NZ_CP047983
Coordinates   3854302..3854394 (-) Length   30 a.a.
NCBI ID   WP_180911214.1    Uniprot ID   -
Organism   Aeromonas caviae strain 1605-27183     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3849302..3859394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWG10_RS17910 (GWG10_17925) - 3850925..3851977 (-) 1053 WP_180911211.1 hypothetical protein -
  GWG10_RS17915 (GWG10_17930) - 3851988..3852629 (-) 642 WP_180911212.1 type II secretion system protein J -
  GWG10_RS23280 (GWG10_17935) - 3852632..3853009 (-) 378 WP_413228158.1 GspH/FimT family protein -
  GWG10_RS17925 (GWG10_17940) - 3853053..3854267 (+) 1215 WP_025711969.1 IS256 family transposase -
  GWG10_RS23285 (GWG10_17945) comP 3854302..3854394 (-) 93 WP_180911214.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GWG10_RS17935 (GWG10_17950) - 3854394..3854882 (-) 489 WP_180911215.1 type IV pilin protein -
  GWG10_RS17940 (GWG10_17955) - 3855061..3855723 (-) 663 WP_219635784.1 SOS response-associated peptidase -
  GWG10_RS17945 (GWG10_17960) umuD 3855851..3856267 (+) 417 WP_235687572.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
  GWG10_RS17950 (GWG10_17965) umuC 3856270..3857544 (+) 1275 WP_180911217.1 translesion error-prone DNA polymerase V subunit UmuC -
  GWG10_RS17955 (GWG10_17970) - 3857516..3857869 (-) 354 WP_180911218.1 hypothetical protein -

Sequence

Protein


Download         Length: 30 a.a.        Molecular weight: 3256.08 Da        Isoelectric Point: 5.8614

>NTDB_id=419019 GWG10_RS23285 WP_180911214.1 3854302..3854394(-) (comP) [Aeromonas caviae strain 1605-27183]
MSNRGFTLIELIVVILILVVLVTVGVPSFI

Nucleotide


Download         Length: 93 bp        

>NTDB_id=419019 GWG10_RS23285 WP_180911214.1 3854302..3854394(-) (comP) [Aeromonas caviae strain 1605-27183]
ATGAGTAATAGGGGATTTACTCTCATAGAGCTGATCGTAGTCATATTAATTCTAGTAGTTCTAGTTACTGTTGGTGTACC
CAGCTTTATTTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

62.963

90

0.567
  comP Neisseria gonorrhoeae MS11

62.963

90

0.567
  pilA/pilA3 Thermus thermophilus HB27

57.692

86.667

0.5
  pilY2 Acinetobacter baumannii D1279779

51.852

90

0.467
  pilA Haemophilus influenzae Rd KW20

53.846

86.667

0.467
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.828

96.667

0.433
  pilA/pilA1 Synechocystis sp. PCC 6803

50

86.667

0.433
  pilE Neisseria gonorrhoeae strain FA1090

50

86.667

0.433
  fimT Acinetobacter baylyi ADP1

52

83.333

0.433
  pilE Neisseria gonorrhoeae MS11

50

86.667

0.433
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52

83.333

0.433
  pilW Acinetobacter baumannii D1279779

48.148

90

0.433
  comGC/cglC Streptococcus pneumoniae TIGR4

46.154

86.667

0.4
  pilA Vibrio parahaemolyticus RIMD 2210633

46.154

86.667

0.4
  comGC/cglC Streptococcus pneumoniae D39

46.154

86.667

0.4
  comGC/cglC Streptococcus pneumoniae R6

46.154

86.667

0.4
  comYC Streptococcus gordonii str. Challis substr. CH1

46.154

86.667

0.4
  comGC/cglC Streptococcus pneumoniae Rx1

46.154

86.667

0.4
  xcpW Acinetobacter baumannii D1279779

57.143

70

0.4
  comF Acinetobacter baylyi ADP1

48

83.333

0.4
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.857

93.333

0.4
  pilX Neisseria meningitidis 8013

41.379

96.667

0.4
  comYC Streptococcus suis isolate S10

41.379

96.667

0.4
  comGF Lactococcus lactis subsp. cremoris KW2

41.379

96.667

0.4
  pilL Neisseria gonorrhoeae MS11

41.379

96.667

0.4
  pilA Vibrio cholerae C6706

42.308

86.667

0.367
  pilA Vibrio cholerae strain A1552

42.308

86.667

0.367
  pilA Vibrio campbellii strain DS40M4

42.308

86.667

0.367
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

42.308

86.667

0.367
  pilA Ralstonia pseudosolanacearum GMI1000

42.308

86.667

0.367
  pilA Acinetobacter baumannii strain A118

39.286

93.333

0.367
  comGD Latilactobacillus sakei subsp. sakei 23K

57.895

63.333

0.367
  comGF Latilactobacillus sakei subsp. sakei 23K

35.484

100

0.367
  fimT Legionella pneumophila strain Lp02

45.833

80

0.367
  ctsG Campylobacter jejuni subsp. jejuni 81-176

45.833

80

0.367

Multiple sequence alignment