Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GWG10_RS18095 | Genome accession | NZ_CP047983 |
| Coordinates | 3877271..3877744 (+) | Length | 157 a.a. |
| NCBI ID | WP_180911237.1 | Uniprot ID | - |
| Organism | Aeromonas caviae strain 1605-27183 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3818216..3879303 | 3877271..3877744 | within | 0 |
Gene organization within MGE regions
Location: 3818216..3879303
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GWG10_RS17760 (GWG10_17775) | - | 3818216..3819058 (+) | 843 | WP_180911193.1 | lytic transglycosylase domain-containing protein | - |
| GWG10_RS17765 (GWG10_17780) | - | 3819629..3819913 (-) | 285 | WP_180911194.1 | DUF2845 domain-containing protein | - |
| GWG10_RS17770 (GWG10_17785) | - | 3819985..3820209 (-) | 225 | WP_180911195.1 | hypothetical protein | - |
| GWG10_RS17775 (GWG10_17790) | - | 3820206..3822155 (-) | 1950 | WP_180911196.1 | hypothetical protein | - |
| GWG10_RS17780 (GWG10_17795) | - | 3822183..3822587 (-) | 405 | WP_180911197.1 | hypothetical protein | - |
| GWG10_RS23010 | - | 3822610..3823761 (-) | 1152 | WP_235687571.1 | LamG domain-containing protein | - |
| GWG10_RS17790 (GWG10_17805) | - | 3823765..3824937 (-) | 1173 | WP_180911198.1 | hypothetical protein | - |
| GWG10_RS17795 (GWG10_17810) | - | 3825053..3828673 (-) | 3621 | WP_180911199.1 | curculin (mannose-binding) lectin protein | - |
| GWG10_RS17800 (GWG10_17815) | - | 3829053..3832631 (-) | 3579 | WP_180911200.1 | tape measure protein | - |
| GWG10_RS17805 (GWG10_17820) | - | 3832731..3833090 (+) | 360 | WP_042881735.1 | hypothetical protein | - |
| GWG10_RS17810 (GWG10_17825) | - | 3833133..3833882 (-) | 750 | WP_042881737.1 | hypothetical protein | - |
| GWG10_RS17815 (GWG10_17830) | - | 3833922..3834344 (-) | 423 | WP_104451772.1 | hypothetical protein | - |
| GWG10_RS17820 (GWG10_17835) | - | 3834341..3834898 (-) | 558 | WP_180911201.1 | phage tail protein | - |
| GWG10_RS17825 (GWG10_17840) | - | 3835055..3836485 (+) | 1431 | WP_103859375.1 | IS4-like element IS50R family transposase | - |
| GWG10_RS17830 (GWG10_17845) | - | 3836988..3837299 (-) | 312 | WP_042016765.1 | head-tail connector protein | - |
| GWG10_RS17835 (GWG10_17850) | - | 3837302..3837490 (-) | 189 | WP_180898738.1 | hypothetical protein | - |
| GWG10_RS17840 (GWG10_17855) | - | 3837557..3838846 (-) | 1290 | WP_180911202.1 | phage major capsid protein | - |
| GWG10_RS17845 (GWG10_17860) | - | 3838915..3839850 (-) | 936 | WP_180911203.1 | S49 family peptidase | - |
| GWG10_RS17850 (GWG10_17865) | - | 3839838..3841091 (-) | 1254 | WP_180911204.1 | phage portal protein | - |
| GWG10_RS17855 (GWG10_17870) | - | 3841091..3841279 (-) | 189 | WP_113069727.1 | hypothetical protein | - |
| GWG10_RS17860 (GWG10_17875) | - | 3841273..3842994 (-) | 1722 | WP_180911205.1 | terminase large subunit | - |
| GWG10_RS17865 (GWG10_17880) | - | 3843004..3843489 (-) | 486 | WP_104451780.1 | phage terminase small subunit P27 family | - |
| GWG10_RS17870 (GWG10_17885) | - | 3843585..3843965 (-) | 381 | WP_180911206.1 | HNH endonuclease | - |
| GWG10_RS17875 (GWG10_17890) | - | 3844052..3844594 (-) | 543 | WP_180911207.1 | DUF2514 domain-containing protein | - |
| GWG10_RS17880 (GWG10_17895) | - | 3844591..3845109 (-) | 519 | WP_180911208.1 | lysozyme | - |
| GWG10_RS17885 (GWG10_17900) | - | 3845096..3845425 (-) | 330 | WP_180911209.1 | phage holin, lambda family | - |
| GWG10_RS17890 (GWG10_17905) | - | 3845689..3846039 (-) | 351 | WP_180911210.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| GWG10_RS17895 (GWG10_17910) | - | 3846368..3847572 (+) | 1205 | WP_102948393.1 | IS3 family transposase | - |
| GWG10_RS17900 (GWG10_17915) | - | 3848065..3849096 (-) | 1032 | WP_180911490.1 | IS630 family transposase | - |
| GWG10_RS17905 (GWG10_17920) | - | 3849119..3850732 (-) | 1614 | WP_010674210.1 | IS1634-like element ISAs25 family transposase | - |
| GWG10_RS17910 (GWG10_17925) | - | 3850925..3851977 (-) | 1053 | WP_180911211.1 | hypothetical protein | - |
| GWG10_RS17915 (GWG10_17930) | - | 3851988..3852629 (-) | 642 | WP_180911212.1 | type II secretion system protein J | - |
| GWG10_RS23280 (GWG10_17935) | - | 3852632..3853009 (-) | 378 | WP_413228158.1 | GspH/FimT family protein | - |
| GWG10_RS17925 (GWG10_17940) | - | 3853053..3854267 (+) | 1215 | WP_025711969.1 | IS256 family transposase | - |
| GWG10_RS23285 (GWG10_17945) | comP | 3854302..3854394 (-) | 93 | WP_180911214.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| GWG10_RS17935 (GWG10_17950) | - | 3854394..3854882 (-) | 489 | WP_180911215.1 | type IV pilin protein | - |
| GWG10_RS17940 (GWG10_17955) | - | 3855061..3855723 (-) | 663 | WP_219635784.1 | SOS response-associated peptidase | - |
| GWG10_RS17945 (GWG10_17960) | umuD | 3855851..3856267 (+) | 417 | WP_235687572.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| GWG10_RS17950 (GWG10_17965) | umuC | 3856270..3857544 (+) | 1275 | WP_180911217.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| GWG10_RS17955 (GWG10_17970) | - | 3857516..3857869 (-) | 354 | WP_180911218.1 | hypothetical protein | - |
| GWG10_RS17960 (GWG10_17975) | - | 3858228..3859535 (+) | 1308 | WP_235687618.1 | SIR2 family protein | - |
| GWG10_RS17965 (GWG10_17980) | - | 3859532..3861364 (+) | 1833 | WP_180911219.1 | ATP-binding protein | - |
| GWG10_RS17970 (GWG10_17985) | - | 3861367..3861576 (+) | 210 | WP_180911220.1 | KTSC domain-containing protein | - |
| GWG10_RS17975 (GWG10_17990) | - | 3861714..3862343 (-) | 630 | WP_180911221.1 | antitermination protein | - |
| GWG10_RS17980 (GWG10_17995) | - | 3862343..3862696 (-) | 354 | WP_235687573.1 | DUF1064 domain-containing protein | - |
| GWG10_RS17985 (GWG10_18000) | - | 3862693..3863682 (-) | 990 | WP_180911222.1 | DUF968 domain-containing protein | - |
| GWG10_RS17990 (GWG10_18005) | - | 3863679..3863942 (-) | 264 | WP_180911223.1 | hypothetical protein | - |
| GWG10_RS17995 (GWG10_18010) | - | 3863926..3864144 (-) | 219 | WP_180911224.1 | DUF3283 family protein | - |
| GWG10_RS18000 (GWG10_18015) | - | 3864116..3864742 (-) | 627 | WP_180911225.1 | 3'-5' exonuclease | - |
| GWG10_RS18005 (GWG10_18020) | - | 3864773..3865582 (-) | 810 | WP_180911226.1 | Bro-N domain-containing protein | - |
| GWG10_RS18010 (GWG10_18025) | - | 3865686..3866075 (-) | 390 | WP_113069713.1 | DUF4406 domain-containing protein | - |
| GWG10_RS18015 (GWG10_18030) | - | 3866065..3866370 (-) | 306 | WP_180911227.1 | hypothetical protein | - |
| GWG10_RS18020 (GWG10_18035) | - | 3866363..3866572 (-) | 210 | WP_042016738.1 | hypothetical protein | - |
| GWG10_RS18025 (GWG10_18040) | - | 3866569..3866799 (-) | 231 | WP_234924017.1 | hypothetical protein | - |
| GWG10_RS18030 (GWG10_18045) | - | 3866796..3867446 (-) | 651 | WP_219635786.1 | hypothetical protein | - |
| GWG10_RS18035 (GWG10_18050) | - | 3867443..3867703 (-) | 261 | WP_180911228.1 | hypothetical protein | - |
| GWG10_RS18040 (GWG10_18055) | - | 3867703..3868365 (-) | 663 | WP_180911229.1 | replication protein P | - |
| GWG10_RS18045 (GWG10_18060) | - | 3868365..3869438 (-) | 1074 | WP_180911230.1 | hypothetical protein | - |
| GWG10_RS18050 (GWG10_18065) | - | 3869778..3870224 (-) | 447 | WP_235687574.1 | phage regulatory CII family protein | - |
| GWG10_RS18055 (GWG10_18070) | - | 3870250..3870516 (-) | 267 | WP_180911231.1 | hypothetical protein | - |
| GWG10_RS18060 (GWG10_18075) | - | 3870621..3871304 (+) | 684 | WP_180911232.1 | LexA family protein | - |
| GWG10_RS18065 (GWG10_18080) | - | 3872560..3872763 (+) | 204 | WP_180911233.1 | hypothetical protein | - |
| GWG10_RS23015 | - | 3872798..3874546 (+) | 1749 | WP_235687575.1 | phage N-6-adenine-methyltransferase | - |
| GWG10_RS18075 (GWG10_18090) | - | 3874543..3876354 (+) | 1812 | WP_180911234.1 | DNA cytosine methyltransferase | - |
| GWG10_RS18080 (GWG10_18095) | - | 3876351..3876788 (+) | 438 | WP_113069703.1 | hypothetical protein | - |
| GWG10_RS18085 (GWG10_18100) | - | 3876764..3876958 (+) | 195 | WP_180911235.1 | hypothetical protein | - |
| GWG10_RS18090 (GWG10_18105) | - | 3877014..3877271 (+) | 258 | WP_180911236.1 | hypothetical protein | - |
| GWG10_RS18095 (GWG10_18110) | ssb | 3877271..3877744 (+) | 474 | WP_180911237.1 | single-stranded DNA-binding protein | Machinery gene |
| GWG10_RS18100 (GWG10_18115) | xisR | 3877811..3878020 (+) | 210 | WP_033130544.1 | excisionase family protein | - |
| GWG10_RS18105 (GWG10_18120) | - | 3877996..3879303 (+) | 1308 | WP_180911238.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17169.28 Da Isoelectric Point: 8.4053
>NTDB_id=419012 GWG10_RS18095 WP_180911237.1 3877271..3877744(+) (ssb) [Aeromonas caviae strain 1605-27183]
MASRGINKVILIGNLGQDPEVRYMPGGNAVTSITLATSDAWRDKQTGEAKERTEWHRVVFMGMLAEVAGKHLKKGSQVYV
EGKLRTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGSGQNGGGKQQAAGSQQRPTPQPAQSPAYTEPPIAYDDDLPF
MASRGINKVILIGNLGQDPEVRYMPGGNAVTSITLATSDAWRDKQTGEAKERTEWHRVVFMGMLAEVAGKHLKKGSQVYV
EGKLRTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGSGQNGGGKQQAAGSQQRPTPQPAQSPAYTEPPIAYDDDLPF
Nucleotide
Download Length: 474 bp
>NTDB_id=419012 GWG10_RS18095 WP_180911237.1 3877271..3877744(+) (ssb) [Aeromonas caviae strain 1605-27183]
ATGGCCAGCCGCGGTATCAACAAGGTCATCCTGATCGGCAACCTCGGCCAGGATCCGGAAGTGCGCTACATGCCCGGCGG
GAACGCTGTCACCAGCATCACCTTGGCGACCTCCGACGCCTGGCGCGATAAGCAGACCGGCGAGGCCAAGGAGCGTACCG
AGTGGCATCGTGTCGTGTTCATGGGAATGTTGGCTGAGGTGGCAGGGAAGCACCTGAAGAAGGGCTCTCAGGTCTATGTG
GAGGGCAAACTGCGGACTCGCAAATGGCAGGACCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTCGTGGACAGCTT
CACAGGGGTGATGCAGATGCTGGGAGGAAGCGGGCAAAACGGAGGAGGGAAACAGCAAGCGGCAGGCAGCCAGCAAAGGC
CAACGCCACAGCCGGCGCAATCACCGGCCTACACCGAACCACCGATCGCTTATGACGACGATCTGCCGTTCTAG
ATGGCCAGCCGCGGTATCAACAAGGTCATCCTGATCGGCAACCTCGGCCAGGATCCGGAAGTGCGCTACATGCCCGGCGG
GAACGCTGTCACCAGCATCACCTTGGCGACCTCCGACGCCTGGCGCGATAAGCAGACCGGCGAGGCCAAGGAGCGTACCG
AGTGGCATCGTGTCGTGTTCATGGGAATGTTGGCTGAGGTGGCAGGGAAGCACCTGAAGAAGGGCTCTCAGGTCTATGTG
GAGGGCAAACTGCGGACTCGCAAATGGCAGGACCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTCGTGGACAGCTT
CACAGGGGTGATGCAGATGCTGGGAGGAAGCGGGCAAAACGGAGGAGGGAAACAGCAAGCGGCAGGCAGCCAGCAAAGGC
CAACGCCACAGCCGGCGCAATCACCGGCCTACACCGAACCACCGATCGCTTATGACGACGATCTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
59.887 |
100 |
0.675 |
| ssb | Glaesserella parasuis strain SC1401 |
49.451 |
100 |
0.573 |
| ssb | Neisseria gonorrhoeae MS11 |
40.678 |
100 |
0.459 |
| ssb | Neisseria meningitidis MC58 |
40.678 |
100 |
0.459 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
33.14 |
100 |
0.363 |