Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   IBC08_RS08745 Genome accession   NZ_CP061019
Coordinates   1692600..1692917 (-) Length   105 a.a.
NCBI ID   WP_082309152.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24853     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1687600..1697917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS08715 (IBC08_08685) - 1687961..1688623 (-) 663 WP_011227583.1 type II CAAX endopeptidase family protein -
  IBC08_RS08720 (IBC08_08690) - 1688720..1689163 (-) 444 WP_084829882.1 CAAX protease -
  IBC08_RS10130 - 1689237..1689662 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  IBC08_RS08730 (IBC08_08700) - 1689904..1690101 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  IBC08_RS08735 (IBC08_08705) - 1690350..1691543 (-) 1194 WP_084831204.1 acetate kinase -
  IBC08_RS08740 (IBC08_08710) comGH 1691599..1692555 (-) 957 WP_207559851.1 class I SAM-dependent methyltransferase Machinery gene
  IBC08_RS08745 (IBC08_08715) comGG 1692600..1692917 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG Machinery gene
  IBC08_RS08750 (IBC08_08720) comGF 1692895..1693332 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  IBC08_RS08755 (IBC08_08725) comGE 1693316..1693609 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  IBC08_RS08760 (IBC08_08730) comGD 1693581..1694009 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IBC08_RS08765 (IBC08_08735) comGC 1693969..1694295 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IBC08_RS08770 (IBC08_08740) comGB 1694292..1695392 (-) 1101 WP_207559852.1 competence type IV pilus assembly protein ComGB Machinery gene
  IBC08_RS08775 (IBC08_08745) comGA/cglA/cilD 1695274..1696215 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  IBC08_RS08780 (IBC08_08750) - 1696296..1696658 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11840.93 Da        Isoelectric Point: 10.6334

>NTDB_id=419009 IBC08_RS08745 WP_082309152.1 1692600..1692917(-) (comGG) [Streptococcus thermophilus strain 24853]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGSFSFSQGTTTYEVKG
KQVIVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=419009 IBC08_RS08745 WP_082309152.1 1692600..1692917(-) (comGG) [Streptococcus thermophilus strain 24853]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTTCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae D39

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae R6

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae TIGR4

42.222

85.714

0.362