MGE detailed information
MGE type: Prophage MGE length: 36647 bp
Accession: NC_016810 Location: 1910986..1947632 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Replicon:
Accession: NC_016810 Location: 1910986..1947632 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Replicon:
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SL1344_RS09240 (SL1344_1779) | 1906143..1907582 | + | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SL1344_RS09245 (SL1344_1780) | 1907700..1907936 | + | 237 | WP_024131108.1 | YebV family protein | - |
| SL1344_RS09250 (SL1344_1781) | 1908047..1908238 | + | 192 | WP_000457836.1 | YebW family protein | - |
| SL1344_RS09255 (SL1344_1782) | 1908257..1908907 | - | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| SL1344_RS09260 (SL1344_1783) | 1909131..1909295 | - | 165 | WP_001134856.1 | membrane protein | - |
| SL1344_RS09265 (SL1344_1784) | 1909580..1910302 | - | 723 | WP_000182072.1 | SPI-1 type III secretion system guanine nucleotide exchange factor SopE2 | - |
| SL1344_RS09270 (SL1344_1785) | 1910986..1911381 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| SL1344_RS09275 (SL1344_1786) | 1911711..1912187 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| SL1344_RS09280 (SL1344_1787) | 1912575..1912994 | - | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| SL1344_RS26675 (SL1344_1788) | 1913364..1913633 | + | 270 | Protein_1820 | hypothetical protein | - |
| SL1344_RS09290 | 1913799..1913939 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| SL1344_RS09295 (SL1344_1790) | 1914085..1915279 | - | 1195 | Protein_1822 | IS256 family transposase IS285 | Transposase |
| SL1344_RS09300 (SL1344_1791) | 1915349..1915771 | + | 423 | Protein_1823 | hypothetical protein ; Integrase | Integrase |
| SL1344_RS09305 (SL1344_1793) | 1917075..1917989 | + | 915 | WP_001233446.1 | DMT family transporter | - |
| SL1344_RS09310 (SL1344_1794) | 1918122..1918280 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| SL1344_RS09315 (SL1344_1795) | 1918290..1918904 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| SL1344_RS27665 (SL1344_1796) | 1919231..1919398 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| SL1344_RS27840 | 1919392..1919538 | + | 147 | WP_001520350.1 | hypothetical protein | - |
| SL1344_RS25410 | 1920052..1920177 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| SL1344_RS27670 (SL1344_1798) | 1920177..1920357 | + | 181 | Protein_1830 | IS3 family transposase | - |
| SL1344_RS09320 (SL1344_1799) | 1920747..1920947 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| SL1344_RS27675 | 1921044..1921514 | - | 471 | Protein_1832 | tail fiber assembly protein | - |
| SL1344_RS27680 | 1921524..1921868 | - | 345 | Protein_1833 | macro domain-containing protein | - |
| SL1344_RS09330 (SL1344_1801) | 1922083..1922343 | - | 261 | Protein_1834 | DUF1441 family protein | - |
| SL1344_RS09335 | 1922398..1922586 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| SL1344_RS09340 (SL1344_1802) | 1922651..1922818 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| SL1344_RS09345 (SL1344_1803) | 1923075..1923608 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| SL1344_RS09350 (SL1344_1804) | 1923662..1923853 | - | 192 | Protein_1838 | glycoside hydrolase family 19 protein | - |
| SL1344_RS27685 | 1923842..1924303 | + | 462 | Protein_1839 | DNA breaking-rejoining protein | - |
| SL1344_RS26685 (SL1344_1806) | 1924567..1925490 | + | 924 | Protein_1840 | hypothetical protein ; Integrase | Integrase |
| - | 1925619..1925764 | + | 146 | - | - | Antitoxin Detail |
| - | 1925621..1925724 | - | 104 | - | - | Toxin Detail |
| SL1344_RS09370 (SL1344_1807) | 1925864..1926217 | - | 354 | WP_000722368.1 | YebY family protein | - |
| SL1344_RS09375 (SL1344_1808) | 1926234..1927109 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| SL1344_RS09380 (SL1344_1809) | 1927110..1927484 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| SL1344_RS09385 (SL1344_1810) | 1927622..1927852 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| SL1344_RS09390 (SL1344_1811) | 1927960..1928616 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| SL1344_RS09395 (SL1344_1812) | 1928640..1929338 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| SL1344_RS09400 (SL1344_1813) | 1929373..1931424 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| SL1344_RS09405 (SL1344_1814) | 1931637..1932296 | - | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| SL1344_RS09410 (SL1344_1815) | 1932390..1932743 | - | 354 | WP_001042119.1 | protein YebF | - |
| SL1344_RS09415 (SL1344_1816) | 1932811..1933101 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| SL1344_RS09420 (SL1344_1817) | 1933232..1934410 | + | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| SL1344_RS09425 (SL1344_1818) | 1934510..1935151 | - | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| SL1344_RS09430 (SL1344_1819) | 1935189..1937000 | - | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| SL1344_RS09435 (SL1344_1820) | 1937235..1938710 | - | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| SL1344_RS09440 (SL1344_1821) | 1939052..1939921 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| SL1344_RS09445 (SL1344_1822) | 1940045..1941487 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| SL1344_RS09450 (SL1344_1823) | 1941560..1942531 | - | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| SL1344_RS09455 (SL1344_1824) | 1942648..1943967 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| SL1344_RS09460 (SL1344_1825) | 1943983..1944927 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| SL1344_RS09465 (SL1344_1826) | 1945006..1945761 | + | 756 | WP_000203014.1 | Zinc import ATP-binding protein ZnuC | VF |
| SL1344_RS09470 (SL1344_1827) | 1945758..1946543 | + | 786 | WP_000571508.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| SL1344_RS09475 (SL1344_1828) | 1946622..1947632 | - | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| SL1344_RS09480 (SL1344_1829) | 1947641..1948252 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| SL1344_RS09485 (SL1344_1830) | 1948672..1949567 | + | 896 | Protein_1864 | DUF4034 domain-containing protein | - |
| SL1344_RS09490 (SL1344_1832) | 1950194..1950793 | + | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| SL1344_RS09495 (SL1344_1833) | 1950795..1951316 | - | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| SL1344_RS09500 (SL1344_1834) | 1951353..1952093 | - | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| SL1344_RS09505 (SL1344_1835) | 1952123..1952575 | - | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 | Prophage | TA26066 | NC_016857 | 1910986..1947632 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 798 | Prophage | TA26196 | NC_017046 | 1900132..1946995 | 0.006 | |
| Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4551 | Prophage | TA37396 | NZ_AP023304 | 2106149..2148486 | 0.006 | |
| Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4741 | Prophage | TA37582 | NZ_AP023319 | 2066210..2108547 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF11077 | Prophage | TA146363 | NZ_CP047525 | 2126064..2168401 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10648 | Prophage | TA146392 | NZ_CP047527 | 2829981..2876851 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452 | Prophage | TA146463 | NZ_CP047535 | 1905977..1948313 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10405 | Prophage | TA146492 | NZ_CP047537 | 2749371..2796240 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10330 | Prophage | TA146547 | NZ_CP047542 | 2829844..2876714 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10169 | Prophage | TA146622 | NZ_CP047548 | 2831168..2875376 | 0.004 | |
| Salmonella enterica subsp. enterica strain PartC-Senterica-RM8376 | Prophage | TA181063 | NZ_CP064385 | 691440..735640 | 0.004 | |
| Salmonella enterica strain no75 | Prophage | TA203515 | NZ_CP075372 | 2142760..2188040 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain Wartortle | Prophage | TA221995 | NZ_CP085820 | 4429873..4476735 | 0.006 | |
| Salmonella enterica strain 2016089-SE | Prophage | TA231073 | NZ_CP090535 | 2106214..2148551 | 0.006 | |
| Salmonella enterica strain 1618 | Prophage | TA233629 | NZ_CP091544 | 2163862..2203455 | 0.002 | |
| Salmonella enterica strain 751 | Prophage | TA233681 | NZ_CP091554 | 2530377..2577247 | 0.006 | |
| Salmonella enterica strain 632 | Prophage | TA233704 | NZ_CP091556 | 2112375..2156583 | 0.004 | |
| Salmonella enterica strain 179 | Prophage | TA233754 | NZ_CP091560 | 2092977..2139847 | 0.006 | |
| Salmonella enterica strain | Prophage | TA233861 | NZ_CP091571 | 2115981..2158318 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain HJL222 | Prophage | TA247945 | NZ_CP098741 | 189953..236815 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain R18.1932 | Prophage | TA251263 | NZ_CP100732 | 1992461..2035549 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0292 | Prophage | TA251307 | NZ_CP100739 | 1992462..2035550 | 0.004 | |
| Salmonella enterica strain SC2016090 | Prophage | TA251996 | NZ_CP101375 | 2742651..2784250 | 0.003 | |
| Salmonella enterica strain SC2017297 | Prophage | TA252119 | NZ_CP101390 | 2166364..2206092 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-75 | Prophage | TA263395 | NZ_CP110198 | 2082922..2129792 | 0.006 | |
| Salmonella enterica strain ZCX | Prophage | TA265923 | NZ_CP113536 | 2673948..2715539 | 0.003 | |
| Salmonella enterica strain PIW95_S14_0299 | Prophage | TA269885 | NZ_CP117033 | 2105754..2145482 | 0.004 | |
| Salmonella enterica strain PIW95_S14_0299 | Prophage | TA269885 | NZ_CP117033 | 2105754..2148091 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain RM095 | Prophage | TA270612 | NZ_CP117338 | 2022987..2069848 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 | Prophage | TA270768 | NZ_CP117357 | 2102635..2144225 | 0.003 |