Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2104790..2104935 | Replicon | chromosome |
| Accession | NZ_CP110198 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-75 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2104830..2104933 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2104790..2104935 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCK70_RS10200 | 2101216..2101914 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| OCK70_RS10205 | 2101938..2102594 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| OCK70_RS10210 | 2102702..2102932 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| OCK70_RS10215 | 2103070..2103444 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| OCK70_RS10220 | 2103445..2104320 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| OCK70_RS10225 | 2104337..2104690 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2104790..2104935 | - | 146 | - | - | Antitoxin |
| - | 2104830..2104933 | + | 104 | - | - | Toxin |
| OCK70_RS10230 | 2105064..2105987 | - | 924 | Protein_2000 | tyrosine-type recombinase/integrase | - |
| OCK70_RS10235 | 2106251..2106712 | - | 462 | Protein_2001 | DNA breaking-rejoining protein | - |
| OCK70_RS10240 | 2106701..2106892 | + | 192 | Protein_2002 | glycoside hydrolase family 19 protein | - |
| OCK70_RS10245 | 2106946..2107479 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| OCK70_RS10250 | 2107736..2107903 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| OCK70_RS10255 | 2107968..2108156 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| OCK70_RS10260 | 2108211..2108471 | + | 261 | Protein_2006 | DUF1441 family protein | - |
| OCK70_RS10265 | 2108686..2109030 | + | 345 | Protein_2007 | macro domain-containing protein | - |
| OCK70_RS10270 | 2109040..2109510 | + | 471 | Protein_2008 | tail fiber assembly protein | - |
| OCK70_RS10275 | 2109607..2109807 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | sopE2 | 2082922..2129792 | 46870 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263395 NZ_CP110198:2104830-2104933 [Salmonella enterica subsp. enterica serovar Typhimurium]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT263395 NZ_CP110198:c2104935-2104790 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
