Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2853363..2853508 | Replicon | chromosome |
| Accession | NZ_CP047548 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10169 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2853365..2853468 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2853363..2853508 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN26_RS13925 | 2848491..2848691 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| DXN26_RS13930 | 2848788..2849258 | - | 471 | Protein_2707 | tail fiber assembly protein | - |
| DXN26_RS13935 | 2849268..2849612 | - | 345 | Protein_2708 | macro domain-containing protein | - |
| DXN26_RS13940 | 2849827..2850087 | - | 261 | Protein_2709 | DUF1441 family protein | - |
| DXN26_RS13945 | 2850142..2850330 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| DXN26_RS13950 | 2850395..2850562 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| DXN26_RS13955 | 2850819..2851352 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| DXN26_RS13960 | 2851406..2851597 | - | 192 | Protein_2713 | glycoside hydrolase family 19 protein | - |
| DXN26_RS13965 | 2851586..2852047 | + | 462 | Protein_2714 | DNA breaking-rejoining protein | - |
| DXN26_RS13970 | 2852311..2853234 | + | 924 | Protein_2715 | tyrosine-type recombinase/integrase | - |
| - | 2853363..2853508 | + | 146 | - | - | Antitoxin |
| - | 2853365..2853468 | - | 104 | - | - | Toxin |
| DXN26_RS13975 | 2853608..2853961 | - | 354 | WP_000722368.1 | YebY family protein | - |
| DXN26_RS13980 | 2853978..2854853 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| DXN26_RS13985 | 2854854..2855228 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| DXN26_RS13990 | 2855366..2855596 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DXN26_RS13995 | 2855704..2856360 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| DXN26_RS14000 | 2856384..2857082 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | sopE2 | 2831168..2875376 | 44208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T146622 NZ_CP047548:c2853468-2853365 [Salmonella enterica subsp. enterica serovar Typhimurium]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT146622 NZ_CP047548:2853363-2853508 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
