Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPPC18_RS04955 Genome accession   NC_017742
Coordinates   1060545..1060808 (-) Length   87 a.a.
NCBI ID   WP_001177718.1    Uniprot ID   A0AAV3IH30
Organism   Helicobacter pylori PeCan18     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1061227..1062814 1060545..1060808 flank 419


Gene organization within MGE regions


Location: 1060545..1062814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC18_RS04955 (HPPC18_05020) comB3 1060545..1060808 (-) 264 WP_001177718.1 hypothetical protein Machinery gene
  HPPC18_RS04960 (HPPC18_05025) comB2 1060820..1061104 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  HPPC18_RS04965 (HPPC18_05030) - 1061227..1062378 (-) 1152 WP_000909425.1 RNA-guided endonuclease InsQ/TnpB family protein -
  HPPC18_RS04970 (HPPC18_05035) tnpA 1062347..1062814 (-) 468 WP_000063681.1 IS200/IS605-like element ISHp608 family transposase -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9988.86 Da        Isoelectric Point: 5.7206

>NTDB_id=50564 HPPC18_RS04955 WP_001177718.1 1060545..1060808(-) (comB3) [Helicobacter pylori PeCan18]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=50564 HPPC18_RS04955 WP_001177718.1 1060545..1060808(-) (comB3) [Helicobacter pylori PeCan18]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

60.92

100

0.609

Multiple sequence alignment