Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPPC18_RS04955 | Genome accession | NC_017742 |
| Coordinates | 1060545..1060808 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177718.1 | Uniprot ID | A0AAV3IH30 |
| Organism | Helicobacter pylori PeCan18 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1055545..1065808
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPC18_RS04935 (HPPC18_05000) | - | 1056454..1057591 (-) | 1138 | Protein_967 | VirB8/TrbF family protein | - |
| HPPC18_RS08750 (HPPC18_05005) | - | 1057584..1057724 (-) | 141 | WP_000789929.1 | hypothetical protein | - |
| HPPC18_RS04945 (HPPC18_05010) | - | 1057721..1060297 (-) | 2577 | WP_000893944.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| HPPC18_RS04950 (HPPC18_05015) | - | 1060297..1060533 (-) | 237 | WP_001168532.1 | hypothetical protein | - |
| HPPC18_RS04955 (HPPC18_05020) | comB3 | 1060545..1060808 (-) | 264 | WP_001177718.1 | hypothetical protein | Machinery gene |
| HPPC18_RS04960 (HPPC18_05025) | comB2 | 1060820..1061104 (-) | 285 | WP_000413637.1 | TrbC/VirB2 family protein | Machinery gene |
| HPPC18_RS04965 (HPPC18_05030) | - | 1061227..1062378 (-) | 1152 | WP_000909425.1 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| HPPC18_RS04970 (HPPC18_05035) | tnpA | 1062347..1062814 (-) | 468 | WP_000063681.1 | IS200/IS605-like element ISHp608 family transposase | - |
| HPPC18_RS04975 (HPPC18_05040) | - | 1062967..1063413 (-) | 447 | WP_000571138.1 | hypothetical protein | - |
| HPPC18_RS08190 (HPPC18_05045) | - | 1063477..1063635 (-) | 159 | WP_001875779.1 | hypothetical protein | - |
| HPPC18_RS04980 (HPPC18_05050) | - | 1063638..1064426 (-) | 789 | WP_001140577.1 | hypothetical protein | - |
| HPPC18_RS08195 | - | 1064502..1065576 (+) | 1075 | Protein_978 | type IV secretion system protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9988.86 Da Isoelectric Point: 5.7206
>NTDB_id=50564 HPPC18_RS04955 WP_001177718.1 1060545..1060808(-) (comB3) [Helicobacter pylori PeCan18]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=50564 HPPC18_RS04955 WP_001177718.1 1060545..1060808(-) (comB3) [Helicobacter pylori PeCan18]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |