Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SII_RS09015 Genome accession   NC_022237
Coordinates   1850527..1851117 (-) Length   196 a.a.
NCBI ID   WP_020999238.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845527..1856117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS10390 - 1846487..1846621 (-) 135 WP_003077174.1 hypothetical protein -
  SII_RS08990 (SII_1769) spx 1846703..1847101 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  SII_RS08995 (SII_1770) recA 1847187..1848332 (-) 1146 WP_003077215.1 recombinase RecA Machinery gene
  SII_RS09000 (SII_1771) cinA 1848381..1849649 (-) 1269 WP_020999237.1 competence/damage-inducible protein A Machinery gene
  SII_RS09005 - 1849785..1849958 (-) 174 Protein_1759 CPBP family intramembrane glutamate endopeptidase -
  SII_RS09010 (SII_1772) - 1849963..1850517 (-) 555 WP_003075291.1 DNA-3-methyladenine glycosylase I -
  SII_RS09015 (SII_1773) ruvA 1850527..1851117 (-) 591 WP_020999238.1 Holliday junction branch migration protein RuvA Machinery gene
  SII_RS09020 (SII_1774) - 1851287..1851793 (+) 507 WP_020999239.1 helix-turn-helix domain-containing protein -
  SII_RS09025 (SII_1775) - 1851777..1852286 (+) 510 WP_041823294.1 RDD family protein -
  SII_RS09030 (SII_1776) hexB 1852432..1854378 (-) 1947 WP_020999241.1 DNA mismatch repair endonuclease MutL Machinery gene
  SII_RS09035 (SII_1777) brsR 1854620..1855060 (+) 441 WP_041823295.1 LytTR family DNA-binding domain-containing protein Regulator
  SII_RS09040 (SII_1778) - 1855057..1855515 (+) 459 WP_020999243.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21585.03 Da        Isoelectric Point: 5.6978

>NTDB_id=50566 SII_RS09015 WP_020999238.1 1850527..1851117(-) (ruvA) [Streptococcus intermedius C270]
MYEYLKGIITKITAKYIVLEVNAIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFSTEEEKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKIVAADGPAESKAPVQTVDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=50566 SII_RS09015 WP_020999238.1 1850527..1851117(-) (ruvA) [Streptococcus intermedius C270]
ATGTACGAATATTTAAAAGGAATTATTACCAAAATCACAGCTAAATACATTGTTTTGGAAGTCAATGCTATTGGGTACAT
TCTTCACGTGGCCAACCCCTATGCTTACTCAGGTCATCTTCATCAGGAAGCCAAGGTCTATGTGCACCAGGTGGTGAGAG
AAGACGCGGAGCTCCTATATGGTTTTTCGACTGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGTCCTGTGTCTGCTTTGGCTATTATTGCGGCGGATGATAATGCTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGCAAGAAGACAGCTCAACAGATGGTACTGGACTTAGAAGGCAAAATAGTGGCTG
CAGATGGTCCGGCAGAAAGCAAGGCGCCCGTTCAGACTGTGGATAATCAGGAGCTGGAGGAAGCCATGGAAGCTATGTTG
GCTCTGGGGTACAAAGCTGCTGAACTTAAGAAAATCAAGAAATTCTTTGAAGGCACAACTGATACAGCTGAAAACTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

85.279

100

0.857
  ruvA Streptococcus pneumoniae R6

85.279

100

0.857
  ruvA Streptococcus pneumoniae D39

85.279

100

0.857
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.827

100

0.444

Multiple sequence alignment