Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPPC18_RS06770 Genome accession   NC_017742
Coordinates   1413675..1414988 (-) Length   437 a.a.
NCBI ID   WP_000653612.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1408675..1419988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC18_RS06740 (HPPC18_06775) nadC 1409144..1409965 (-) 822 WP_000405969.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPPC18_RS06745 (HPPC18_06780) nadA 1409965..1410969 (-) 1005 WP_001141758.1 quinolinate synthase NadA -
  HPPC18_RS06750 (HPPC18_06785) - 1410959..1411762 (-) 804 WP_000226141.1 phosphatidylserine decarboxylase -
  HPPC18_RS06755 (HPPC18_06790) - 1411756..1412262 (-) 507 WP_000953090.1 DUF6115 domain-containing protein -
  HPPC18_RS06760 (HPPC18_06795) - 1412275..1412769 (-) 495 WP_014662432.1 hypothetical protein -
  HPPC18_RS06765 (HPPC18_06800) mqnP 1412762..1413604 (-) 843 WP_228921228.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPPC18_RS06770 (HPPC18_06805) comEC/comE3 1413675..1414988 (-) 1314 WP_000653612.1 ComEC/Rec2 family competence protein Machinery gene
  HPPC18_RS06775 (HPPC18_06810) - 1414985..1416451 (-) 1467 WP_000349772.1 replicative DNA helicase -
  HPPC18_RS06780 (HPPC18_06815) - 1416462..1417856 (-) 1395 WP_000954039.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPPC18_RS06785 (HPPC18_06820) crdS 1417859..1419061 (-) 1203 WP_080024933.1 copper-sensing histidine kinase CrdS -
  HPPC18_RS06790 (HPPC18_06825) crdR 1419027..1419668 (-) 642 WP_001169816.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50202.15 Da        Isoelectric Point: 9.8368

>NTDB_id=50567 HPPC18_RS06770 WP_000653612.1 1413675..1414988(-) (comEC/comE3) [Helicobacter pylori PeCan18]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIVLLPKLLFSVGFLLSVCGVWYIFLFLKHAQIFFKNSSFLARSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHFLSMPLTIPTISISSPLWLLGAHLFLT
IVSARFFKVYLSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=50567 HPPC18_RS06770 WP_000653612.1 1413675..1414988(-) (comEC/comE3) [Helicobacter pylori PeCan18]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAATG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCACTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTACTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCAATAGTGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTGTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACGCTCAAATTTTTTTTAAAAATTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTATTGGATCATT
TTTTAAGCATGCCTTTAACAATCCCCACGATTTCAATCTCTTCGCCCTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTGTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938

Multiple sequence alignment