Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LLUC08_RS09015 Genome accession   NZ_CP015903
Coordinates   1857081..1857269 (-) Length   62 a.a.
NCBI ID   WP_353511539.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1852081..1862269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS08990 (LLUC08_1750) atpF 1852150..1852656 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LLUC08_RS08995 (LLUC08_1751) atpB 1852671..1853384 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLUC08_RS09000 (LLUC08_1752) - 1853429..1853644 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  LLUC08_RS09005 (LLUC08_1753) - 1853829..1854605 (-) 777 WP_023188533.1 alpha/beta hydrolase family protein -
  LLUC08_RS09010 (LLUC08_1754) comEC 1854890..1857100 (-) 2211 WP_081200021.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LLUC08_RS09015 (LLUC08_02755) comEA 1857081..1857269 (-) 189 WP_353511539.1 ComEA family DNA-binding protein Machinery gene
  LLUC08_RS09020 (LLUC08_1755) comEA 1857291..1857728 (-) 438 WP_237025748.1 SLBB domain-containing protein Machinery gene
  LLUC08_RS09025 (LLUC08_1756) - 1857788..1859149 (-) 1362 WP_081200024.1 ABC transporter permease -
  LLUC08_RS09030 (LLUC08_1757) - 1859146..1860078 (-) 933 WP_004255238.1 ABC transporter ATP-binding protein -
  LLUC08_RS09035 (LLUC08_1758) - 1860183..1860527 (-) 345 WP_259747958.1 hypothetical protein -
  LLUC08_RS09040 (LLUC08_1759) - 1860685..1861248 (-) 564 WP_004255233.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 6962.90 Da        Isoelectric Point: 4.7085

>NTDB_id=183132 LLUC08_RS09015 WP_353511539.1 1857081..1857269(-) (comEA) [Lactococcus lactis subsp. lactis strain UC08]
MNINQADLTELQKLTGVGQKKAQDIIDFRTKNGDFKSLEDLGKVSGFGDKTLEKLKDELCFE

Nucleotide


Download         Length: 189 bp        

>NTDB_id=183132 LLUC08_RS09015 WP_353511539.1 1857081..1857269(-) (comEA) [Lactococcus lactis subsp. lactis strain UC08]
ATAAATATCAATCAAGCAGATTTGACTGAACTACAAAAATTAACAGGTGTTGGTCAGAAAAAAGCTCAAGACATCATCGA
TTTTCGGACGAAAAATGGTGATTTCAAATCACTTGAAGACTTGGGAAAAGTTTCTGGTTTTGGAGATAAAACACTAGAAA
AATTGAAAGATGAGTTGTGTTTTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(2-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

85.484

100

0.855
  comEA/celA/cilE Streptococcus mitis NCTC 12261

54.839

100

0.548
  comEA/celA/cilE Streptococcus pneumoniae Rx1

54.839

100

0.548
  comEA/celA/cilE Streptococcus pneumoniae D39

54.839

100

0.548
  comEA/celA/cilE Streptococcus pneumoniae R6

54.839

100

0.548
  comEA/celA/cilE Streptococcus mitis SK321

54.839

100

0.548
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

54.839

100

0.548
  comEA/comE1 Glaesserella parasuis strain SC1401

50.794

100

0.516
  comEA Latilactobacillus sakei subsp. sakei 23K

51.667

96.774

0.5
  comEA Acinetobacter baylyi ADP1

50

96.774

0.484
  comE1/comEA Haemophilus influenzae Rd KW20

48.387

100

0.484
  comEA Bacillus subtilis subsp. subtilis str. 168

50.847

95.161

0.484
  comE Neisseria gonorrhoeae MS11

50

93.548

0.468
  comE Neisseria gonorrhoeae MS11

50

93.548

0.468
  comE Neisseria gonorrhoeae MS11

50

93.548

0.468
  comE Neisseria gonorrhoeae MS11

50

93.548

0.468
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.774

100

0.468
  comEA Streptococcus thermophilus LMD-9

45.763

95.161

0.435
  comEA Acinetobacter baumannii strain A118

45

96.774

0.435
  comEA Staphylococcus aureus N315

48.214

90.323

0.435
  comEA Staphylococcus aureus MW2

48.214

90.323

0.435
  comEA Legionella pneumophila str. Paris

43.548

100

0.435
  comEA Vibrio parahaemolyticus RIMD 2210633

43.548

100

0.435
  comEA Legionella pneumophila strain ERS1305867

43.548

100

0.435
  comEA Acinetobacter baumannii D1279779

43.333

96.774

0.419
  comEA Vibrio campbellii strain DS40M4

41.935

100

0.419
  comEA Vibrio cholerae C6706

47.17

85.484

0.403
  comEA Vibrio cholerae strain A1552

47.17

85.484

0.403
  comA Synechocystis sp. PCC 6803

37.705

98.387

0.371
  comEA Thermus thermophilus HB27

38.983

95.161

0.371

Multiple sequence alignment