Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LLUC08_RS09020 Genome accession   NZ_CP015903
Coordinates   1857291..1857728 (-) Length   145 a.a.
NCBI ID   WP_237025748.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1852291..1862728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS08995 (LLUC08_1751) atpB 1852671..1853384 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLUC08_RS09000 (LLUC08_1752) - 1853429..1853644 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  LLUC08_RS09005 (LLUC08_1753) - 1853829..1854605 (-) 777 WP_023188533.1 alpha/beta hydrolase family protein -
  LLUC08_RS09010 (LLUC08_1754) comEC 1854890..1857100 (-) 2211 WP_081200021.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LLUC08_RS09015 (LLUC08_02755) comEA 1857081..1857269 (-) 189 WP_353511539.1 ComEA family DNA-binding protein Machinery gene
  LLUC08_RS09020 (LLUC08_1755) comEA 1857291..1857728 (-) 438 WP_237025748.1 SLBB domain-containing protein Machinery gene
  LLUC08_RS09025 (LLUC08_1756) - 1857788..1859149 (-) 1362 WP_081200024.1 ABC transporter permease -
  LLUC08_RS09030 (LLUC08_1757) - 1859146..1860078 (-) 933 WP_004255238.1 ABC transporter ATP-binding protein -
  LLUC08_RS09035 (LLUC08_1758) - 1860183..1860527 (-) 345 WP_259747958.1 hypothetical protein -
  LLUC08_RS09040 (LLUC08_1759) - 1860685..1861248 (-) 564 WP_004255233.1 GNAT family N-acetyltransferase -
  LLUC08_RS09045 (LLUC08_1760) - 1861421..1862599 (-) 1179 WP_012898345.1 SLC13 family permease -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15865.04 Da        Isoelectric Point: 4.9633

>NTDB_id=183133 LLUC08_RS09020 WP_237025748.1 1857291..1857728(-) (comEA) [Lactococcus lactis subsp. lactis strain UC08]
MDKILEKVKEYWKMIVLVVCGLIAGGIFYVLTNGQKPTTNLSVENLSSVSRQSSVSKFSEPNEKSVSKIMVDLKVAVTKP
NVYQISSDERLVDLIKEAGGFTDQADQKSINLSAKLKDEEVIYVPKIGENSSTENTDSSANSVTS

Nucleotide


Download         Length: 438 bp        

>NTDB_id=183133 LLUC08_RS09020 WP_237025748.1 1857291..1857728(-) (comEA) [Lactococcus lactis subsp. lactis strain UC08]
ATGGATAAGATTTTAGAAAAAGTAAAAGAATATTGGAAAATGATTGTTTTAGTTGTTTGTGGGCTCATTGCTGGTGGGAT
TTTTTACGTTTTAACCAACGGTCAAAAGCCAACTACAAATCTGTCAGTAGAAAATTTAAGTTCTGTCAGCAGGCAAAGCT
CTGTCAGTAAATTTAGTGAACCTAATGAAAAATCTGTCAGTAAAATTATGGTTGATTTAAAAGTTGCGGTAACAAAGCCT
AATGTCTATCAAATTTCGTCAGATGAACGTCTAGTTGATCTAATTAAGGAAGCTGGTGGTTTTACTGACCAAGCTGACCA
GAAATCAATTAATCTGTCAGCAAAATTAAAAGATGAAGAAGTAATTTATGTCCCAAAAATTGGTGAAAATTCAAGCACAG
AAAATACTGATAGCTCTGCTAATTCGGTCACTAGTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(77-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

73.288

100

0.738
  comEA/celA/cilE Streptococcus mitis SK321

39.735

100

0.414
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

38.562

100

0.407
  comEA/celA/cilE Streptococcus mitis NCTC 12261

36.601

100

0.386
  comEA/celA/cilE Streptococcus pneumoniae Rx1

35.948

100

0.379
  comEA/celA/cilE Streptococcus pneumoniae D39

35.948

100

0.379
  comEA/celA/cilE Streptococcus pneumoniae R6

35.948

100

0.379

Multiple sequence alignment