Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QM552_RS21190 Genome accession   NZ_OW011623
Coordinates   1849564..1849743 (-) Length   59 a.a.
NCBI ID   WP_282809995.1    Uniprot ID   -
Organism   Thauera humireducens strain Piv1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1846474..1856160 1849564..1849743 within 0


Gene organization within MGE regions


Location: 1846474..1856160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM552_RS08330 (C4PIVTH_1738) - 1846474..1846773 (-) 300 WP_282809991.1 nucleotidyltransferase domain-containing protein -
  QM552_RS08335 (C4PIVTH_1739) - 1846853..1847716 (-) 864 WP_282809992.1 hypothetical protein -
  QM552_RS08340 (C4PIVTH_1740) - 1847716..1848486 (-) 771 WP_282809993.1 hypothetical protein -
  QM552_RS08345 (C4PIVTH_1741) - 1849096..1849536 (-) 441 WP_282809994.1 hypothetical protein -
  QM552_RS21190 (C4PIVTH_1742) pilV 1849564..1849743 (-) 180 WP_282809995.1 type IV pilin protein Machinery gene
  QM552_RS08355 (C4PIVTH_1743) - 1850031..1850231 (-) 201 Protein_1647 hypothetical protein -
  QM552_RS08360 (C4PIVTH_1744) - 1850245..1850622 (-) 378 WP_282809997.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QM552_RS08365 (C4PIVTH_1745) - 1850619..1850906 (-) 288 WP_004291581.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  QM552_RS08370 (C4PIVTH_1747) - 1850982..1851134 (-) 153 Protein_1650 glutathione-disulfide reductase -
  QM552_RS21195 - 1851174..1851329 (-) 156 WP_407084164.1 HepT-like ribonuclease domain-containing protein -
  QM552_RS08375 (C4PIVTH_1748) - 1851289..1851561 (-) 273 WP_282809998.1 nucleotidyltransferase family protein -
  QM552_RS08380 (C4PIVTH_1749) gorA 1851685..1853025 (-) 1341 WP_320415432.1 glutathione-disulfide reductase -
  QM552_RS08385 (C4PIVTH_1750) - 1853053..1853355 (-) 303 WP_282810000.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QM552_RS08390 (C4PIVTH_1751) - 1853345..1853590 (-) 246 WP_048706619.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  QM552_RS08395 (C4PIVTH_1752) - 1853687..1854625 (-) 939 WP_282810001.1 helix-turn-helix transcriptional regulator -
  QM552_RS08400 (C4PIVTH_1753) mobA 1854633..1855271 (-) 639 WP_282810002.1 molybdenum cofactor guanylyltransferase MobA -
  QM552_RS08405 (C4PIVTH_1754) - 1855333..1856160 (-) 828 WP_282810003.1 formate dehydrogenase accessory sulfurtransferase FdhD -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6347.54 Da        Isoelectric Point: 8.6389

>NTDB_id=1152209 QM552_RS21190 WP_282809995.1 1849564..1849743(-) (pilV) [Thauera humireducens strain Piv1]
MKKIQKGFTLIELMIVVAIIGILAAIAIPQFNEYRAKANDSTAQADAKNGETVLMAAQI

Nucleotide


Download         Length: 180 bp        

>NTDB_id=1152209 QM552_RS21190 WP_282809995.1 1849564..1849743(-) (pilV) [Thauera humireducens strain Piv1]
ATGAAAAAGATTCAGAAGGGCTTCACCCTGATCGAACTGATGATCGTCGTGGCGATCATCGGCATCTTGGCTGCCATCGC
GATTCCGCAGTTCAACGAGTATCGCGCCAAGGCGAACGACTCGACTGCTCAAGCGGACGCCAAGAATGGCGAAACCGTGC
TGATGGCCGCACAGATCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.172

98.305

0.542
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

54.386

96.61

0.525
  pilA Pseudomonas aeruginosa PAK

72.093

72.881

0.525
  pilA2 Legionella pneumophila strain ERS1305867

66.667

76.271

0.508
  pilA2 Legionella pneumophila str. Paris

66.667

76.271

0.508
  pilA Acinetobacter nosocomialis M2

76.923

66.102

0.508
  pilA/pilAI Pseudomonas stutzeri DSM 10701

59.184

83.051

0.492
  pilA Acinetobacter baumannii strain A118

85.294

57.627

0.492
  pilA/pilA1 Eikenella corrodens VA1

73.684

64.407

0.475
  pilA Glaesserella parasuis strain SC1401

61.364

74.576

0.458
  pilE Neisseria gonorrhoeae strain FA1090

62.791

72.881

0.458
  pilE Neisseria gonorrhoeae MS11

62.791

72.881

0.458
  pilA Ralstonia pseudosolanacearum GMI1000

72.973

62.712

0.458
  pilA Vibrio campbellii strain DS40M4

72.973

62.712

0.458
  pilA Vibrio cholerae C6706

75

61.017

0.458
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

75

61.017

0.458
  pilA Vibrio cholerae strain A1552

75

61.017

0.458
  comP Acinetobacter baylyi ADP1

76.471

57.627

0.441
  comF Acinetobacter baylyi ADP1

59.091

74.576

0.441
  pilA Vibrio parahaemolyticus RIMD 2210633

55.319

79.661

0.441
  comE Acinetobacter baylyi ADP1

54.348

77.966

0.424
  pilA/pilAII Pseudomonas stutzeri DSM 10701

54.348

77.966

0.424
  pilA Haemophilus influenzae 86-028NP

64.865

62.712

0.407
  pilA Haemophilus influenzae Rd KW20

63.158

64.407

0.407
  pilE Acinetobacter baumannii D1279779

52.174

77.966

0.407
  pilA/pilA4 Thermus thermophilus HB27

60

67.797

0.407
  pilA/pilA1 Synechocystis sp. PCC 6803

52.273

74.576

0.39
  pilX Neisseria meningitidis 8013

62.162

62.712

0.39
  pilL Neisseria gonorrhoeae MS11

62.162

62.712

0.39

Multiple sequence alignment