Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00234 insolico
T6SS type Type i3
Strain Serratia proteamaculans 568
Replicon (RefSeq) chromosome (NC_009832)
Location 3294549..3324584
Function -
Comment -
References
-
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentFHAPAARTagJTssATssBTssCTssDTssETssFTssGTssHTssITssJTssKTssLTssM
Number1111112111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
SPRO_RS15315 (uspC) 3289587..3290006 + 420 WP_012145713.1 universal stress protein UspC
SPRO_RS15320 3290083..3291117 + 1035 WP_012145714.1 NADP-dependent oxidoreductase
SPRO_RS15325 (pcp) 3291233..3291880 - 648 WP_012145715.1 pyroglutamyl-peptidase I
SPRO_RS15330 3291978..3292910 + 933 WP_012145716.1 LysR family transcriptional regulator
SPRO_RS26625 3293668..3293955 + 288 WP_012145717.1 hypothetical protein
SPRO_RS15335 3294022..3294522 + 501 WP_012145718.1 hypothetical protein
T6CP002330 TssJ SPRO_RS15340 (tssJ) 3294549..3295079 + 531 WP_012145719.1 type VI secretion system lipoprotein TssJ
T6CP002331 TssK SPRO_RS15345 (tssK) 3295120..3296466 + 1347 WP_012145720.1 type VI secretion system baseplate subunit TssK
T6CP002332 TssL SPRO_RS15350 3296470..3297690 + 1221 WP_012145721.1 DotU family type VI secretion system protein
T6CP002333 TssM SPRO_RS15355 (tssM) 3297690..3301328 + 3639 WP_012145722.1 type VI secretion system membrane subunit TssM
SPRO_RS15360 (tagF) 3301346..3302065 + 720 WP_041418604.1 type VI secretion system-associated protein TagF
T6CP002334 TssA SPRO_RS15365 (tssA) 3302089..3303114 + 1026 WP_012145724.1 type VI secretion system protein TssA
T6CP002335 TssB SPRO_RS15370 (tssB) 3303219..3303755 + 537 WP_012145725.1 type VI secretion system contractile sheath small subunit
T6CP002336 TssC SPRO_RS15375 (tssC) 3303759..3305264 + 1506 WP_012145726.1 type VI secretion system contractile sheath large subunit
T6CP002337 TssD SPRO_RS15380 3305545..3306027 + 483 WP_012145727.1 type VI secretion system tube protein Hcp
T6CP011625 FHA SPRO_RS15385 (tagH) 3306251..3307969 + 1719 WP_012145728.1 type VI secretion system-associated FHA domain protein TagH
SPRO_RS15390 3307969..3308742 + 774 WP_012145729.1 protein phosphatase 2C domain-containing protein
SPRO_RS15395 3308773..3309759 + 987 WP_012145730.1 hypothetical protein
T6CP012750 TagJ SPRO_RS15400 3309795..3310592 + 798 WP_083757604.1 protein of avirulence locus ImpE
T6CP002338 TssE SPRO_RS15405 3310595..3311170 + 576 WP_012145732.1 GPW/gp25 family protein
T6CP002339 TssF SPRO_RS15410 (tssF) 3311175..3313061 + 1887 WP_012145733.1 type VI secretion system baseplate subunit TssF
T6CP002340 TssG SPRO_RS15415 (tssG) 3313058..3314131 + 1074 WP_012145734.1 type VI secretion system baseplate subunit TssG
T6CP002341 TssH SPRO_RS15420 (tssH) 3314184..3316847 + 2664 WP_012145735.1 type VI secretion system ATPase TssH
SPRO_RS15425 3316896..3318338 + 1443 WP_012145736.1 serine/threonine protein kinase
T6CP002342 TssI SPRO_RS15430 (tssI) 3318424..3320361 + 1938 WP_012145737.1 type VI secretion system tip protein VgrG
SPRO_RS15435 3320375..3321181 + 807 WP_012145738.1 DcrB-related protein
T6CP011626 PAAR SPRO_RS15440 3321185..3322519 + 1335 WP_012145739.1 PAAR domain-containing protein
SPRO_RS15445 3322516..3323616 + 1101 WP_012145740.1 ADP-ribosylglycohydrolase family protein
T6CP002343 TssD SPRO_RS15450 3324102..3324584 + 483 WP_012145741.1 type VI secretion system tube protein Hcp
SPRO_RS15455 3324599..3325507 + 909 WP_012145742.1 hypothetical protein
SPRO_RS15460 (sbmC) 3325601..3326071 - 471 WP_012145743.1 DNA gyrase inhibitor SbmC
SPRO_RS15465 (kynA) 3326104..3326946 - 843 WP_012145744.1 tryptophan 2,3-dioxygenase
SPRO_RS15470 3327144..3327659 - 516 WP_012145745.1 MaoC family dehydratase
SPRO_RS15475 3327653..3328609 - 957 WP_012145746.1 ornithine cyclodeaminase family protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF01495 experimental Spro_3017 (Tre1) Tre IMU00317 experimental; IMU00330 experimental; IMU00331 experimental; IMU00332 experimental Serratia proteamaculans 568 chromosome (NC_009832) 3321185..3322519 (+) 157371257

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
IMU00317 experimental Spro_3018 (Tri1) EFF01495 experimental Serratia proteamaculans 568 chromosome (NC_009832) 3322516..3323616 (+) 501095675

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector