Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00234  |
| T6SS type | Type i3 |
| Strain | Serratia proteamaculans 568 |
| Replicon (RefSeq) | chromosome (NC_009832) |
| Location | 3294549..3324584 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | PAAR | TagJ | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| SPRO_RS15315 (uspC) | 3289587..3290006 | + | 420 | WP_012145713.1 | universal stress protein UspC | ||
| SPRO_RS15320 | 3290083..3291117 | + | 1035 | WP_012145714.1 | NADP-dependent oxidoreductase | ||
| SPRO_RS15325 (pcp) | 3291233..3291880 | - | 648 | WP_012145715.1 | pyroglutamyl-peptidase I | ||
| SPRO_RS15330 | 3291978..3292910 | + | 933 | WP_012145716.1 | LysR family transcriptional regulator | ||
| SPRO_RS26625 | 3293668..3293955 | + | 288 | WP_012145717.1 | hypothetical protein | ||
| SPRO_RS15335 | 3294022..3294522 | + | 501 | WP_012145718.1 | hypothetical protein | ||
| T6CP002330 | TssJ | SPRO_RS15340 (tssJ) | 3294549..3295079 | + | 531 | WP_012145719.1 | type VI secretion system lipoprotein TssJ |
| T6CP002331 | TssK | SPRO_RS15345 (tssK) | 3295120..3296466 | + | 1347 | WP_012145720.1 | type VI secretion system baseplate subunit TssK |
| T6CP002332 | TssL | SPRO_RS15350 | 3296470..3297690 | + | 1221 | WP_012145721.1 | DotU family type VI secretion system protein |
| T6CP002333 | TssM | SPRO_RS15355 (tssM) | 3297690..3301328 | + | 3639 | WP_012145722.1 | type VI secretion system membrane subunit TssM |
| SPRO_RS15360 (tagF) | 3301346..3302065 | + | 720 | WP_041418604.1 | type VI secretion system-associated protein TagF | ||
| T6CP002334 | TssA | SPRO_RS15365 (tssA) | 3302089..3303114 | + | 1026 | WP_012145724.1 | type VI secretion system protein TssA |
| T6CP002335 | TssB | SPRO_RS15370 (tssB) | 3303219..3303755 | + | 537 | WP_012145725.1 | type VI secretion system contractile sheath small subunit |
| T6CP002336 | TssC | SPRO_RS15375 (tssC) | 3303759..3305264 | + | 1506 | WP_012145726.1 | type VI secretion system contractile sheath large subunit |
| T6CP002337 | TssD | SPRO_RS15380 | 3305545..3306027 | + | 483 | WP_012145727.1 | type VI secretion system tube protein Hcp |
| T6CP011625 | FHA | SPRO_RS15385 (tagH) | 3306251..3307969 | + | 1719 | WP_012145728.1 | type VI secretion system-associated FHA domain protein TagH |
| SPRO_RS15390 | 3307969..3308742 | + | 774 | WP_012145729.1 | protein phosphatase 2C domain-containing protein | ||
| SPRO_RS15395 | 3308773..3309759 | + | 987 | WP_012145730.1 | hypothetical protein | ||
| T6CP012750 | TagJ | SPRO_RS15400 | 3309795..3310592 | + | 798 | WP_083757604.1 | protein of avirulence locus ImpE |
| T6CP002338 | TssE | SPRO_RS15405 | 3310595..3311170 | + | 576 | WP_012145732.1 | GPW/gp25 family protein |
| T6CP002339 | TssF | SPRO_RS15410 (tssF) | 3311175..3313061 | + | 1887 | WP_012145733.1 | type VI secretion system baseplate subunit TssF |
| T6CP002340 | TssG | SPRO_RS15415 (tssG) | 3313058..3314131 | + | 1074 | WP_012145734.1 | type VI secretion system baseplate subunit TssG |
| T6CP002341 | TssH | SPRO_RS15420 (tssH) | 3314184..3316847 | + | 2664 | WP_012145735.1 | type VI secretion system ATPase TssH |
| SPRO_RS15425 | 3316896..3318338 | + | 1443 | WP_012145736.1 | serine/threonine protein kinase | ||
| T6CP002342 | TssI | SPRO_RS15430 (tssI) | 3318424..3320361 | + | 1938 | WP_012145737.1 | type VI secretion system tip protein VgrG |
| SPRO_RS15435 | 3320375..3321181 | + | 807 | WP_012145738.1 | DcrB-related protein | ||
| T6CP011626 | PAAR | SPRO_RS15440 | 3321185..3322519 | + | 1335 | WP_012145739.1 | PAAR domain-containing protein |
| SPRO_RS15445 | 3322516..3323616 | + | 1101 | WP_012145740.1 | ADP-ribosylglycohydrolase family protein | ||
| T6CP002343 | TssD | SPRO_RS15450 | 3324102..3324584 | + | 483 | WP_012145741.1 | type VI secretion system tube protein Hcp |
| SPRO_RS15455 | 3324599..3325507 | + | 909 | WP_012145742.1 | hypothetical protein | ||
| SPRO_RS15460 (sbmC) | 3325601..3326071 | - | 471 | WP_012145743.1 | DNA gyrase inhibitor SbmC | ||
| SPRO_RS15465 (kynA) | 3326104..3326946 | - | 843 | WP_012145744.1 | tryptophan 2,3-dioxygenase | ||
| SPRO_RS15470 | 3327144..3327659 | - | 516 | WP_012145745.1 | MaoC family dehydratase | ||
| SPRO_RS15475 | 3327653..3328609 | - | 957 | WP_012145746.1 | ornithine cyclodeaminase family protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01495 |
Spro_3017 (Tre1) | Tre | IMU00317 ; IMU00330 ; IMU00331 ; IMU00332 |
Serratia proteamaculans 568 | chromosome (NC_009832) | 3321185..3322519 (+) | 157371257 |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| IMU00317 |
Spro_3018 (Tri1) | EFF01495 |
Serratia proteamaculans 568 | chromosome (NC_009832) | 3322516..3323616 (+) | 501095675 |
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|