Detailed information of component protein
Summary
| Component ID | T6CP002333 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS00234  (Type i3) |
| Strain | Serratia proteamaculans 568 |
| Replicon | chromosome |
| Sequence | Protein sequence (1213 a.a.); Nucleotide sequence (3639 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SPRO_RS15355 |
| Coordinate (Strand) | 3297690..3301328 (+) |
| NCBI ID | WP_012145722.1 |
| RefSeq | NC_009832 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| IcmF-related_N | PF14331.8 | 2.3e-95 | 210..484 |
| IcmF-related | PF06761.14 | 8.8e-86 | 536..840 |
| IcmF_C | PF06744.14 | 2e-22 | 1095..1198 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 1213 a.a.
>T6CP002333 NC_009832:3297690-3301328 [Serratia proteamaculans 568] [TssM]
MLSTLFSIITSRLLWGFAGITALAFIIWMIGPLVAIGDYRPLEPALNRQLTIGAIYLIWFLCRIIPRIYSAWFNRRLLSN
LRAAEEVPAENGKPVAKQDEQLAQRFDEAAQLLKKARFAPGQGDSKHRWMTHFSSQYLYQLPWYVIIGAPGAGKTTALVN
SGLHFPLADRFGKSALRGVGGTRNCDWWFTNDAVLLDTAGRYTTQESQREEDADEWKSFVGLLKKYRTRQPINGVMVTIS
IADLLSESSEARAAQASSLRKRLIELHEQLGIHFPVYVLVTKTDLLNGFMAYFNGFDKAQREQIWGFTFPYEASRQPDFN
LNATFEQQYALLQQRLDAALPETLLVEHDGRQRAESYLFPQEFAALRPLLGQYLEQVFATSSFETRFTPRGIYFTSGTQE
GLPFDRVMGELNRYLQLPTANSQPHANPAWNHVDPAAPIPAGKGQSFFLKDTLESVIFQESGLAGSNRWWEYRNRAVHWA
GYILLAACLAILAIFWFTSYSNNKAYLAEVAAKVPGVERQGLGLTQLGNGDMLSLLPFLNSVLHLPDSQNFSLEDPPFTY
RMGLYRGDQVSDASDSLYQKALKELLLPQVAQQIATTLRNDNHGDADFSYEALKAYQMLYLPKQYDGKFLRAWVMLNLQR
NLPQGSTQKQLQQIEWHLSQLLDEQIQASPYAKDEPMVEQAQAALNRAPLSQRVYGRLKRLLLKQTEIKPVSLVDLAGPQ
TELAFSRKSGKPVTDGVPGLYTSRGYWKTFNDNIDPVTDTLRQEDVWVLNSKTPDQKNADLIKTIRQLYMQDFINAWDEL
LGDIQLANIGNLSQRISSARLLSGNPSPMRNLLVNVSKNVTLRDEKSTADSRSLLDKTEDRLSQSANHQLEALFTHRPAN
ADGDVSAQPEQLVMAHFAALLELAQSQGEGNKAIPFDSVLKQVDELYSYLTAVQGAANSGMSAPPSDIIPRLQAESGRLP
VPFKQMLLSLAIGASSDTQRKEMENVKKRISVEVGSFCRQAIAGRYPLVARARQEVTPDDLARMFAPNSGLMDSFFRDNL
QGKVDTTRANWRFTPGVDGKTLPGGEGILRSFQQAQRIRDAFFANGTATPSYRVTVRPVRMDNDILNLTLDIDGQLFKYS
HGPQVPLVISWPGTRNTNQVHLQLALANGSTASLVTSGPWALNRLVDMAQTSAGSSSLGRQATFNLDGHRVTLEFTPNSI
RNPFQLPAFSCP*
MLSTLFSIITSRLLWGFAGITALAFIIWMIGPLVAIGDYRPLEPALNRQLTIGAIYLIWFLCRIIPRIYSAWFNRRLLSN
LRAAEEVPAENGKPVAKQDEQLAQRFDEAAQLLKKARFAPGQGDSKHRWMTHFSSQYLYQLPWYVIIGAPGAGKTTALVN
SGLHFPLADRFGKSALRGVGGTRNCDWWFTNDAVLLDTAGRYTTQESQREEDADEWKSFVGLLKKYRTRQPINGVMVTIS
IADLLSESSEARAAQASSLRKRLIELHEQLGIHFPVYVLVTKTDLLNGFMAYFNGFDKAQREQIWGFTFPYEASRQPDFN
LNATFEQQYALLQQRLDAALPETLLVEHDGRQRAESYLFPQEFAALRPLLGQYLEQVFATSSFETRFTPRGIYFTSGTQE
GLPFDRVMGELNRYLQLPTANSQPHANPAWNHVDPAAPIPAGKGQSFFLKDTLESVIFQESGLAGSNRWWEYRNRAVHWA
GYILLAACLAILAIFWFTSYSNNKAYLAEVAAKVPGVERQGLGLTQLGNGDMLSLLPFLNSVLHLPDSQNFSLEDPPFTY
RMGLYRGDQVSDASDSLYQKALKELLLPQVAQQIATTLRNDNHGDADFSYEALKAYQMLYLPKQYDGKFLRAWVMLNLQR
NLPQGSTQKQLQQIEWHLSQLLDEQIQASPYAKDEPMVEQAQAALNRAPLSQRVYGRLKRLLLKQTEIKPVSLVDLAGPQ
TELAFSRKSGKPVTDGVPGLYTSRGYWKTFNDNIDPVTDTLRQEDVWVLNSKTPDQKNADLIKTIRQLYMQDFINAWDEL
LGDIQLANIGNLSQRISSARLLSGNPSPMRNLLVNVSKNVTLRDEKSTADSRSLLDKTEDRLSQSANHQLEALFTHRPAN
ADGDVSAQPEQLVMAHFAALLELAQSQGEGNKAIPFDSVLKQVDELYSYLTAVQGAANSGMSAPPSDIIPRLQAESGRLP
VPFKQMLLSLAIGASSDTQRKEMENVKKRISVEVGSFCRQAIAGRYPLVARARQEVTPDDLARMFAPNSGLMDSFFRDNL
QGKVDTTRANWRFTPGVDGKTLPGGEGILRSFQQAQRIRDAFFANGTATPSYRVTVRPVRMDNDILNLTLDIDGQLFKYS
HGPQVPLVISWPGTRNTNQVHLQLALANGSTASLVTSGPWALNRLVDMAQTSAGSSSLGRQATFNLDGHRVTLEFTPNSI
RNPFQLPAFSCP*
Nucleotide sequence: 3639 bp
>T6CP002333 NC_009832:3297690-3301328 [Serratia proteamaculans 568] [TssM]
ATGCTCAGTACGTTATTCTCCATCATCACCAGCCGCCTGTTATGGGGCTTTGCCGGCATTACTGCGCTGGCGTTCATCAT
CTGGATGATCGGCCCGTTGGTGGCTATCGGCGATTATCGGCCGCTGGAGCCGGCACTCAACCGCCAGTTAACCATCGGCG
CTATCTATCTGATCTGGTTCCTGTGCCGCATTATTCCACGCATCTACAGTGCCTGGTTCAACCGCCGCCTGCTGAGTAAC
CTGCGTGCCGCCGAAGAAGTCCCGGCTGAAAACGGCAAGCCGGTAGCCAAACAGGATGAGCAGTTGGCCCAGCGCTTTGA
TGAAGCGGCGCAATTGTTGAAGAAAGCCCGCTTCGCACCGGGTCAGGGGGACAGCAAACACCGCTGGATGACCCACTTCA
GCAGTCAATATCTCTACCAGTTGCCGTGGTATGTGATCATCGGTGCGCCGGGTGCCGGTAAAACCACCGCGCTGGTCAAC
TCCGGCCTGCATTTTCCGCTGGCGGATCGCTTCGGCAAGTCTGCCCTGCGCGGTGTGGGCGGTACCCGTAACTGCGACTG
GTGGTTCACCAATGACGCCGTGCTGCTTGACACCGCGGGTCGTTATACCACTCAGGAAAGCCAGCGCGAGGAAGACGCCG
ACGAGTGGAAAAGCTTCGTCGGCCTGCTGAAAAAATACCGTACCCGTCAGCCGATCAACGGCGTGATGGTGACCATCAGC
ATCGCCGATCTGTTGAGCGAAAGTAGCGAAGCCCGCGCCGCGCAGGCCAGCTCGCTGCGTAAACGCCTGATTGAGCTGCA
TGAACAGTTGGGGATCCATTTCCCGGTTTATGTGTTGGTCACCAAGACCGACCTGCTGAATGGCTTTATGGCCTATTTCA
ACGGCTTTGATAAAGCGCAGCGCGAGCAAATCTGGGGGTTCACCTTCCCCTATGAGGCATCGCGTCAGCCAGATTTCAAT
CTGAATGCCACCTTCGAACAACAGTATGCTTTGCTGCAGCAGCGACTGGATGCCGCGCTGCCTGAGACCTTGCTGGTTGA
ACATGATGGCCGCCAGCGGGCTGAAAGCTACCTGTTCCCGCAGGAATTCGCGGCCCTGCGTCCGCTGCTGGGCCAGTATC
TGGAACAGGTGTTTGCCACCTCCAGTTTTGAAACCCGCTTCACCCCGCGCGGTATTTACTTCACCAGCGGCACCCAGGAA
GGACTGCCGTTCGATCGGGTAATGGGCGAACTGAACCGTTACCTGCAATTGCCAACGGCGAACAGCCAACCACACGCCAA
CCCGGCCTGGAACCATGTGGATCCGGCCGCGCCCATCCCGGCTGGCAAGGGGCAAAGCTTCTTCCTGAAAGACACGCTGG
AATCGGTGATCTTCCAGGAGTCCGGGTTGGCGGGCAGCAACCGCTGGTGGGAATACCGTAACCGCGCTGTGCATTGGGCG
GGCTATATCCTGCTGGCGGCCTGCCTGGCGATCCTGGCGATTTTCTGGTTCACCAGCTACAGCAACAACAAGGCTTATCT
GGCTGAAGTGGCCGCCAAGGTACCCGGCGTAGAACGCCAGGGGCTGGGTCTGACGCAGTTGGGCAATGGCGATATGCTTT
CGCTGCTGCCGTTCCTCAACAGCGTGCTGCATTTGCCGGACAGTCAGAACTTCTCGCTGGAAGATCCCCCGTTCACCTAT
CGCATGGGGCTGTACCGTGGCGATCAGGTCAGTGATGCCAGCGACTCGCTGTATCAGAAAGCGCTAAAGGAGTTGCTGCT
GCCACAGGTGGCACAGCAGATCGCCACGACGCTGCGCAACGACAACCACGGCGATGCCGATTTTAGCTACGAAGCGCTGA
AGGCCTACCAGATGCTGTATCTGCCGAAACAGTATGACGGCAAATTCCTGCGCGCCTGGGTCATGCTCAACCTGCAACGC
AACCTGCCGCAGGGCAGCACCCAGAAGCAGCTGCAGCAGATTGAATGGCACCTGAGCCAATTGCTCGACGAACAGATCCA
AGCTTCGCCTTACGCCAAAGATGAACCTATGGTGGAACAGGCCCAGGCCGCGCTAAACCGTGCTCCCCTGTCGCAGCGGG
TGTACGGCCGCCTGAAACGCCTGCTGCTTAAGCAAACCGAGATTAAACCGGTCAGCCTGGTTGACCTGGCCGGCCCGCAG
ACCGAACTGGCCTTTTCGCGCAAAAGCGGCAAACCGGTGACCGACGGGGTGCCGGGCCTGTATACCTCACGGGGCTATTG
GAAAACCTTCAACGACAATATTGATCCGGTGACCGATACCCTGCGTCAGGAAGATGTTTGGGTACTGAACAGCAAAACCC
CGGATCAGAAAAACGCCGATTTGATCAAAACCATTCGCCAACTGTACATGCAGGACTTTATCAACGCCTGGGATGAACTG
CTGGGTGATATTCAGTTGGCAAATATCGGAAACCTGAGTCAGCGCATCAGCAGCGCACGCTTGTTGTCAGGCAACCCTTC
GCCGATGCGTAACCTGCTGGTTAACGTCAGCAAAAATGTCACCCTGCGCGACGAGAAAAGCACTGCTGACTCCCGTTCGC
TGCTGGATAAAACCGAAGACCGGCTGAGCCAGAGTGCCAACCACCAATTGGAAGCCCTGTTCACCCATCGACCGGCCAAC
GCCGACGGCGATGTCTCAGCCCAGCCGGAACAACTGGTGATGGCGCATTTCGCCGCATTACTGGAGCTGGCGCAAAGTCA
GGGAGAAGGCAACAAGGCGATCCCGTTCGACAGCGTGCTGAAACAGGTTGATGAGTTGTACAGCTACCTGACCGCGGTTC
AGGGTGCGGCCAACAGCGGCATGTCGGCACCGCCCAGCGATATCATCCCGCGCTTGCAGGCCGAGTCCGGTCGTTTACCG
GTGCCGTTCAAACAGATGCTGCTGTCGCTGGCGATTGGTGCCAGCAGCGACACGCAACGCAAAGAGATGGAAAACGTCAA
GAAACGCATCAGCGTCGAAGTCGGCAGCTTCTGCCGCCAGGCGATTGCCGGGCGTTATCCTCTGGTCGCCCGGGCGCGTC
AGGAAGTGACGCCAGACGATTTGGCGCGCATGTTTGCGCCGAACAGCGGGCTGATGGACAGCTTCTTCCGTGACAATTTG
CAGGGCAAGGTCGACACCACCCGTGCCAACTGGCGTTTCACTCCCGGCGTAGACGGCAAAACGCTGCCCGGTGGCGAAGG
CATCCTGCGTTCATTTCAGCAGGCGCAACGCATTCGTGACGCCTTCTTCGCCAACGGTACCGCCACGCCGTCTTACCGGG
TGACCGTACGACCGGTACGGATGGATAACGACATCCTCAACCTGACGCTGGATATCGACGGGCAACTGTTCAAATACAGC
CACGGGCCGCAGGTTCCTCTGGTGATCAGTTGGCCGGGTACCCGCAATACCAATCAGGTGCACCTGCAGCTGGCACTGGC
CAACGGCTCCACCGCCAGCCTGGTCACCAGCGGCCCCTGGGCGCTGAACCGTTTGGTGGATATGGCGCAGACTTCCGCCG
GCAGCAGCAGCCTCGGTCGTCAGGCAACCTTTAACCTGGATGGCCACCGCGTAACGCTGGAGTTCACTCCCAACAGTATC
CGCAATCCGTTCCAGTTACCGGCATTCTCCTGCCCGTAG
ATGCTCAGTACGTTATTCTCCATCATCACCAGCCGCCTGTTATGGGGCTTTGCCGGCATTACTGCGCTGGCGTTCATCAT
CTGGATGATCGGCCCGTTGGTGGCTATCGGCGATTATCGGCCGCTGGAGCCGGCACTCAACCGCCAGTTAACCATCGGCG
CTATCTATCTGATCTGGTTCCTGTGCCGCATTATTCCACGCATCTACAGTGCCTGGTTCAACCGCCGCCTGCTGAGTAAC
CTGCGTGCCGCCGAAGAAGTCCCGGCTGAAAACGGCAAGCCGGTAGCCAAACAGGATGAGCAGTTGGCCCAGCGCTTTGA
TGAAGCGGCGCAATTGTTGAAGAAAGCCCGCTTCGCACCGGGTCAGGGGGACAGCAAACACCGCTGGATGACCCACTTCA
GCAGTCAATATCTCTACCAGTTGCCGTGGTATGTGATCATCGGTGCGCCGGGTGCCGGTAAAACCACCGCGCTGGTCAAC
TCCGGCCTGCATTTTCCGCTGGCGGATCGCTTCGGCAAGTCTGCCCTGCGCGGTGTGGGCGGTACCCGTAACTGCGACTG
GTGGTTCACCAATGACGCCGTGCTGCTTGACACCGCGGGTCGTTATACCACTCAGGAAAGCCAGCGCGAGGAAGACGCCG
ACGAGTGGAAAAGCTTCGTCGGCCTGCTGAAAAAATACCGTACCCGTCAGCCGATCAACGGCGTGATGGTGACCATCAGC
ATCGCCGATCTGTTGAGCGAAAGTAGCGAAGCCCGCGCCGCGCAGGCCAGCTCGCTGCGTAAACGCCTGATTGAGCTGCA
TGAACAGTTGGGGATCCATTTCCCGGTTTATGTGTTGGTCACCAAGACCGACCTGCTGAATGGCTTTATGGCCTATTTCA
ACGGCTTTGATAAAGCGCAGCGCGAGCAAATCTGGGGGTTCACCTTCCCCTATGAGGCATCGCGTCAGCCAGATTTCAAT
CTGAATGCCACCTTCGAACAACAGTATGCTTTGCTGCAGCAGCGACTGGATGCCGCGCTGCCTGAGACCTTGCTGGTTGA
ACATGATGGCCGCCAGCGGGCTGAAAGCTACCTGTTCCCGCAGGAATTCGCGGCCCTGCGTCCGCTGCTGGGCCAGTATC
TGGAACAGGTGTTTGCCACCTCCAGTTTTGAAACCCGCTTCACCCCGCGCGGTATTTACTTCACCAGCGGCACCCAGGAA
GGACTGCCGTTCGATCGGGTAATGGGCGAACTGAACCGTTACCTGCAATTGCCAACGGCGAACAGCCAACCACACGCCAA
CCCGGCCTGGAACCATGTGGATCCGGCCGCGCCCATCCCGGCTGGCAAGGGGCAAAGCTTCTTCCTGAAAGACACGCTGG
AATCGGTGATCTTCCAGGAGTCCGGGTTGGCGGGCAGCAACCGCTGGTGGGAATACCGTAACCGCGCTGTGCATTGGGCG
GGCTATATCCTGCTGGCGGCCTGCCTGGCGATCCTGGCGATTTTCTGGTTCACCAGCTACAGCAACAACAAGGCTTATCT
GGCTGAAGTGGCCGCCAAGGTACCCGGCGTAGAACGCCAGGGGCTGGGTCTGACGCAGTTGGGCAATGGCGATATGCTTT
CGCTGCTGCCGTTCCTCAACAGCGTGCTGCATTTGCCGGACAGTCAGAACTTCTCGCTGGAAGATCCCCCGTTCACCTAT
CGCATGGGGCTGTACCGTGGCGATCAGGTCAGTGATGCCAGCGACTCGCTGTATCAGAAAGCGCTAAAGGAGTTGCTGCT
GCCACAGGTGGCACAGCAGATCGCCACGACGCTGCGCAACGACAACCACGGCGATGCCGATTTTAGCTACGAAGCGCTGA
AGGCCTACCAGATGCTGTATCTGCCGAAACAGTATGACGGCAAATTCCTGCGCGCCTGGGTCATGCTCAACCTGCAACGC
AACCTGCCGCAGGGCAGCACCCAGAAGCAGCTGCAGCAGATTGAATGGCACCTGAGCCAATTGCTCGACGAACAGATCCA
AGCTTCGCCTTACGCCAAAGATGAACCTATGGTGGAACAGGCCCAGGCCGCGCTAAACCGTGCTCCCCTGTCGCAGCGGG
TGTACGGCCGCCTGAAACGCCTGCTGCTTAAGCAAACCGAGATTAAACCGGTCAGCCTGGTTGACCTGGCCGGCCCGCAG
ACCGAACTGGCCTTTTCGCGCAAAAGCGGCAAACCGGTGACCGACGGGGTGCCGGGCCTGTATACCTCACGGGGCTATTG
GAAAACCTTCAACGACAATATTGATCCGGTGACCGATACCCTGCGTCAGGAAGATGTTTGGGTACTGAACAGCAAAACCC
CGGATCAGAAAAACGCCGATTTGATCAAAACCATTCGCCAACTGTACATGCAGGACTTTATCAACGCCTGGGATGAACTG
CTGGGTGATATTCAGTTGGCAAATATCGGAAACCTGAGTCAGCGCATCAGCAGCGCACGCTTGTTGTCAGGCAACCCTTC
GCCGATGCGTAACCTGCTGGTTAACGTCAGCAAAAATGTCACCCTGCGCGACGAGAAAAGCACTGCTGACTCCCGTTCGC
TGCTGGATAAAACCGAAGACCGGCTGAGCCAGAGTGCCAACCACCAATTGGAAGCCCTGTTCACCCATCGACCGGCCAAC
GCCGACGGCGATGTCTCAGCCCAGCCGGAACAACTGGTGATGGCGCATTTCGCCGCATTACTGGAGCTGGCGCAAAGTCA
GGGAGAAGGCAACAAGGCGATCCCGTTCGACAGCGTGCTGAAACAGGTTGATGAGTTGTACAGCTACCTGACCGCGGTTC
AGGGTGCGGCCAACAGCGGCATGTCGGCACCGCCCAGCGATATCATCCCGCGCTTGCAGGCCGAGTCCGGTCGTTTACCG
GTGCCGTTCAAACAGATGCTGCTGTCGCTGGCGATTGGTGCCAGCAGCGACACGCAACGCAAAGAGATGGAAAACGTCAA
GAAACGCATCAGCGTCGAAGTCGGCAGCTTCTGCCGCCAGGCGATTGCCGGGCGTTATCCTCTGGTCGCCCGGGCGCGTC
AGGAAGTGACGCCAGACGATTTGGCGCGCATGTTTGCGCCGAACAGCGGGCTGATGGACAGCTTCTTCCGTGACAATTTG
CAGGGCAAGGTCGACACCACCCGTGCCAACTGGCGTTTCACTCCCGGCGTAGACGGCAAAACGCTGCCCGGTGGCGAAGG
CATCCTGCGTTCATTTCAGCAGGCGCAACGCATTCGTGACGCCTTCTTCGCCAACGGTACCGCCACGCCGTCTTACCGGG
TGACCGTACGACCGGTACGGATGGATAACGACATCCTCAACCTGACGCTGGATATCGACGGGCAACTGTTCAAATACAGC
CACGGGCCGCAGGTTCCTCTGGTGATCAGTTGGCCGGGTACCCGCAATACCAATCAGGTGCACCTGCAGCTGGCACTGGC
CAACGGCTCCACCGCCAGCCTGGTCACCAGCGGCCCCTGGGCGCTGAACCGTTTGGTGGATATGGCGCAGACTTCCGCCG
GCAGCAGCAGCCTCGGTCGTCAGGCAACCTTTAACCTGGATGGCCACCGCGTAACGCTGGAGTTCACTCCCAACAGTATC
CGCAATCCGTTCCAGTTACCGGCATTCTCCTGCCCGTAG