Detailed information of component protein


Summary

Component ID T6CP002340
Component protein type TssG
T6SS ID (Type) T6SS00234 insolico (Type i3)
Strain Serratia proteamaculans 568
Replicon chromosome
Sequence Protein sequence (358 a.a.); Nucleotide sequence (1074 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SPRO_RS15415
Coordinate (Strand) 3313058..3314131 (+)
NCBI ID WP_012145734.1
RefSeq NC_009832
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.4e-100 34..334
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 358 a.a.    

>T6CP002340 NC_009832:3313058-3314131 [Serratia proteamaculans 568] [TssG]
MSTLDAEAELTAPPQINALHRLPEDFWLRLGNAPYKHDLFQLLRRLDAQGGQPYLLGRAPLPRHEMLRLGQEPSLSFAPS
TLAQVSPRPQSSLHDVSIFSFGLFGPNGPLPLHLTEYVRERVYHHQDTTLLAFANLFHHRLTLLFYRAWADAQPTVSLDR
QDNRRFDQYLSSLIGIGQPAQQQRDSINAHAKHFMAGHLIRHSRDPEGLSKILQQYFKVPVRIVENVPHWLRVEPREQAR
LKAGRGAPRLGESSFLGIAVRDIQHKFRIELGPMSQQNYEGFLPGAELCRQLRDWVRQYLGIEFVWELRLILAKDQLSGT
QLGGAQRLGLSSWLEDARQQRDLDDLIFSPEPLENPF*

  Nucleotide sequence: 1074 bp    

>T6CP002340 NC_009832:3313058-3314131 [Serratia proteamaculans 568] [TssG]
TTGAGCACTCTTGACGCCGAGGCGGAACTGACGGCACCGCCACAGATCAATGCCTTGCACCGCCTGCCGGAGGATTTCTG
GCTGCGGCTCGGCAATGCGCCTTATAAACACGATTTGTTTCAGCTGCTGCGGCGCCTCGACGCCCAGGGCGGCCAGCCAT
ACCTGCTGGGCCGTGCCCCCCTGCCGCGCCATGAGATGCTGCGGCTGGGGCAAGAACCTTCACTGTCGTTCGCTCCGTCG
ACGCTGGCACAGGTCAGCCCACGGCCGCAAAGCTCGCTGCACGACGTTTCTATTTTCAGCTTTGGCCTGTTTGGCCCCAA
CGGGCCGCTGCCGCTGCACCTGACCGAATACGTGCGTGAACGGGTCTATCACCACCAGGACACCACCCTGCTGGCCTTTG
CCAACCTGTTTCACCACCGGCTGACGCTGCTGTTTTACCGCGCCTGGGCCGACGCACAGCCCACGGTATCGCTGGATCGT
CAGGATAACCGGCGTTTCGACCAATACCTTTCCAGCCTGATTGGCATCGGCCAGCCGGCACAGCAGCAGCGCGACAGCAT
CAATGCCCATGCCAAGCATTTTATGGCCGGTCATCTGATTCGCCACAGCCGCGATCCGGAAGGCCTGAGCAAAATCTTGC
AGCAGTATTTCAAGGTGCCGGTGCGCATCGTGGAAAACGTCCCGCACTGGCTGCGGGTAGAACCGCGCGAACAGGCGCGC
CTGAAGGCCGGTCGCGGCGCCCCCCGGCTCGGTGAGTCTTCGTTCCTCGGGATTGCCGTGCGCGATATTCAGCACAAATT
CCGCATCGAACTGGGGCCGATGTCGCAACAAAACTATGAAGGCTTCTTGCCCGGAGCCGAACTGTGCCGGCAGTTGCGCG
ACTGGGTGCGCCAGTATCTGGGCATTGAGTTTGTTTGGGAACTGCGGCTGATCCTGGCCAAGGATCAGCTCAGCGGCACC
CAACTCGGCGGTGCCCAGCGCCTGGGATTAAGCAGTTGGCTGGAAGACGCCCGTCAGCAACGCGACCTTGACGATCTGAT
CTTCAGCCCCGAACCGCTGGAAAACCCGTTCTGA