Detailed information of component protein


Summary

Component ID T6CP011625
Component protein type FHA
T6SS ID (Type) T6SS00234 insolico (Type i3)
Strain Serratia proteamaculans 568
Replicon chromosome
Sequence Protein sequence (573 a.a.); Nucleotide sequence (1719 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) SPRO_RS15385
Coordinate (Strand) 3306251..3307969 (+)
NCBI ID WP_012145728.1
RefSeq NC_009832
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 4.7e-07 27..93

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 573 a.a.    

>T6CP011625 NC_009832:3306251-3307969 [Serratia proteamaculans 568] [FHA]
MRFSIVKNKSGQVPPQSSCDFLPPGGTIGRSVDNNLVLPDEERAISRLQAIVHISADGECRVTNRGNVTRVLLNDIPLER
GRQVELQDGDILGIDDYQIQVSSLQQAAAPQAQPTIKTADTAPVTTPAAKEKAAAPIPNEIWDSLVEEFTPATAVTAPPA
PVINQDSHPLLETPEPEMNPADPLAQLAGDVELRQLQSQQTDPAMLFNTDTTFERDPILADTTPSALLAEKHPTTSQAAP
IKPAEAEKNAQELDPLALFGGSSAPTSPDALNSNDPLGLLMGSAVPLAQPEPPAAVPPPASPLQQPVMAAPVEAPQPKAA
PQPEPQFSPSTPPPSPQPRPRPANRLGIDPIAYQTARAQNGSAPAGERLEGPLLAALLQGVGLDDLQPQPHFDEQQLRQA
GRLLSLFSQGTVALLSSRSILKRGVKAEMTMILDEANNPFKLLPSGKTVLMQMFGSKMPGFMPPEQAVRDALIDLQAHQL
GMIAGIRAIIAAMLQSFNPDRLEEEARKEGAAPRLSLPASRKAALWDYFVKSYQQTSGEIEDDFHTLFGEAFLHAYDVEV
NQYKDSQTQPDA*

  Nucleotide sequence: 1719 bp    

>T6CP011625 NC_009832:3306251-3307969 [Serratia proteamaculans 568] [FHA]
ATGCGATTTTCTATTGTCAAAAATAAAAGTGGCCAGGTTCCGCCACAGAGCAGCTGCGACTTTCTGCCGCCCGGCGGCAC
CATTGGCCGTAGCGTGGACAACAACCTGGTATTGCCGGACGAAGAGCGTGCCATCTCCCGGTTGCAGGCGATCGTACATA
TTTCTGCTGATGGCGAATGCCGCGTAACCAACCGTGGCAACGTCACCCGCGTGTTGCTGAACGATATTCCCCTGGAGCGC
GGCCGTCAGGTGGAGCTGCAGGATGGTGATATTCTCGGCATCGACGATTATCAGATCCAGGTCAGCTCCTTACAGCAAGC
GGCTGCACCGCAGGCTCAGCCGACAATTAAAACCGCCGACACCGCGCCAGTCACTACACCGGCTGCCAAAGAGAAAGCGG
CAGCCCCCATCCCGAATGAGATCTGGGACAGCCTGGTAGAAGAGTTCACGCCAGCCACGGCGGTGACTGCGCCCCCGGCA
CCGGTCATTAATCAGGACAGCCATCCGCTGCTGGAAACGCCGGAGCCTGAGATGAACCCGGCCGATCCGCTGGCGCAGTT
GGCGGGCGACGTCGAACTACGTCAACTGCAGTCGCAGCAAACCGATCCGGCAATGTTGTTCAACACCGACACCACCTTCG
AGCGCGATCCTATTTTGGCCGATACCACCCCAAGTGCGCTGTTGGCCGAAAAACACCCGACCACCAGCCAGGCTGCGCCG
ATCAAACCCGCTGAGGCGGAAAAAAATGCCCAGGAGCTCGATCCGCTGGCGCTGTTTGGCGGTTCTTCTGCCCCCACGTC
GCCGGACGCGTTGAACAGCAACGATCCGCTCGGCCTGCTGATGGGCAGCGCTGTCCCCCTGGCACAGCCAGAGCCTCCGG
CTGCGGTGCCACCACCGGCGTCCCCATTACAGCAACCGGTGATGGCTGCCCCGGTGGAAGCACCGCAACCCAAAGCCGCG
CCGCAACCTGAGCCACAGTTTTCGCCTTCAACCCCACCGCCCTCACCGCAACCTCGTCCACGCCCGGCCAACCGCCTGGG
TATCGATCCGATTGCCTATCAGACTGCGCGTGCCCAAAACGGTAGCGCACCTGCGGGTGAGCGGTTGGAAGGCCCACTGT
TAGCCGCATTACTGCAGGGGGTGGGTCTGGATGACCTGCAGCCACAGCCACACTTTGATGAGCAGCAGCTCCGCCAGGCC
GGTCGGCTGCTGAGCCTGTTTTCTCAGGGGACCGTCGCCCTGCTCTCTTCCCGCTCAATCCTTAAGCGCGGTGTGAAGGC
CGAGATGACCATGATCCTCGACGAGGCCAATAACCCGTTCAAACTGCTGCCCTCGGGCAAAACGGTATTGATGCAGATGT
TCGGCAGCAAAATGCCGGGGTTTATGCCGCCGGAACAGGCGGTACGCGACGCACTGATCGACCTGCAGGCGCACCAGTTA
GGCATGATCGCCGGTATTCGCGCCATCATCGCCGCCATGCTGCAGTCGTTCAATCCGGATCGCCTCGAAGAGGAGGCGCG
CAAGGAAGGCGCGGCACCTCGTCTGTCCCTGCCGGCCAGCCGCAAGGCGGCGCTGTGGGATTACTTCGTGAAAAGCTATC
AGCAGACCTCCGGCGAAATCGAAGACGACTTTCACACCCTGTTCGGCGAAGCCTTCCTGCACGCCTATGACGTTGAAGTG
AATCAATATAAAGACTCACAGACCCAACCGGACGCGTAA