Detailed information of component protein
Summary
| Component ID | T6CP011625 |
| Component protein type | FHA |
| T6SS ID (Type) | T6SS00234  (Type i3) |
| Strain | Serratia proteamaculans 568 |
| Replicon | chromosome |
| Sequence | Protein sequence (573 a.a.); Nucleotide sequence (1719 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SPRO_RS15385 |
| Coordinate (Strand) | 3306251..3307969 (+) |
| NCBI ID | WP_012145728.1 |
| RefSeq | NC_009832 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| FHA | PF00498.28 | 4.7e-07 | 27..93 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 573 a.a.
>T6CP011625 NC_009832:3306251-3307969 [Serratia proteamaculans 568] [FHA]
MRFSIVKNKSGQVPPQSSCDFLPPGGTIGRSVDNNLVLPDEERAISRLQAIVHISADGECRVTNRGNVTRVLLNDIPLER
GRQVELQDGDILGIDDYQIQVSSLQQAAAPQAQPTIKTADTAPVTTPAAKEKAAAPIPNEIWDSLVEEFTPATAVTAPPA
PVINQDSHPLLETPEPEMNPADPLAQLAGDVELRQLQSQQTDPAMLFNTDTTFERDPILADTTPSALLAEKHPTTSQAAP
IKPAEAEKNAQELDPLALFGGSSAPTSPDALNSNDPLGLLMGSAVPLAQPEPPAAVPPPASPLQQPVMAAPVEAPQPKAA
PQPEPQFSPSTPPPSPQPRPRPANRLGIDPIAYQTARAQNGSAPAGERLEGPLLAALLQGVGLDDLQPQPHFDEQQLRQA
GRLLSLFSQGTVALLSSRSILKRGVKAEMTMILDEANNPFKLLPSGKTVLMQMFGSKMPGFMPPEQAVRDALIDLQAHQL
GMIAGIRAIIAAMLQSFNPDRLEEEARKEGAAPRLSLPASRKAALWDYFVKSYQQTSGEIEDDFHTLFGEAFLHAYDVEV
NQYKDSQTQPDA*
MRFSIVKNKSGQVPPQSSCDFLPPGGTIGRSVDNNLVLPDEERAISRLQAIVHISADGECRVTNRGNVTRVLLNDIPLER
GRQVELQDGDILGIDDYQIQVSSLQQAAAPQAQPTIKTADTAPVTTPAAKEKAAAPIPNEIWDSLVEEFTPATAVTAPPA
PVINQDSHPLLETPEPEMNPADPLAQLAGDVELRQLQSQQTDPAMLFNTDTTFERDPILADTTPSALLAEKHPTTSQAAP
IKPAEAEKNAQELDPLALFGGSSAPTSPDALNSNDPLGLLMGSAVPLAQPEPPAAVPPPASPLQQPVMAAPVEAPQPKAA
PQPEPQFSPSTPPPSPQPRPRPANRLGIDPIAYQTARAQNGSAPAGERLEGPLLAALLQGVGLDDLQPQPHFDEQQLRQA
GRLLSLFSQGTVALLSSRSILKRGVKAEMTMILDEANNPFKLLPSGKTVLMQMFGSKMPGFMPPEQAVRDALIDLQAHQL
GMIAGIRAIIAAMLQSFNPDRLEEEARKEGAAPRLSLPASRKAALWDYFVKSYQQTSGEIEDDFHTLFGEAFLHAYDVEV
NQYKDSQTQPDA*
Nucleotide sequence: 1719 bp
>T6CP011625 NC_009832:3306251-3307969 [Serratia proteamaculans 568] [FHA]
ATGCGATTTTCTATTGTCAAAAATAAAAGTGGCCAGGTTCCGCCACAGAGCAGCTGCGACTTTCTGCCGCCCGGCGGCAC
CATTGGCCGTAGCGTGGACAACAACCTGGTATTGCCGGACGAAGAGCGTGCCATCTCCCGGTTGCAGGCGATCGTACATA
TTTCTGCTGATGGCGAATGCCGCGTAACCAACCGTGGCAACGTCACCCGCGTGTTGCTGAACGATATTCCCCTGGAGCGC
GGCCGTCAGGTGGAGCTGCAGGATGGTGATATTCTCGGCATCGACGATTATCAGATCCAGGTCAGCTCCTTACAGCAAGC
GGCTGCACCGCAGGCTCAGCCGACAATTAAAACCGCCGACACCGCGCCAGTCACTACACCGGCTGCCAAAGAGAAAGCGG
CAGCCCCCATCCCGAATGAGATCTGGGACAGCCTGGTAGAAGAGTTCACGCCAGCCACGGCGGTGACTGCGCCCCCGGCA
CCGGTCATTAATCAGGACAGCCATCCGCTGCTGGAAACGCCGGAGCCTGAGATGAACCCGGCCGATCCGCTGGCGCAGTT
GGCGGGCGACGTCGAACTACGTCAACTGCAGTCGCAGCAAACCGATCCGGCAATGTTGTTCAACACCGACACCACCTTCG
AGCGCGATCCTATTTTGGCCGATACCACCCCAAGTGCGCTGTTGGCCGAAAAACACCCGACCACCAGCCAGGCTGCGCCG
ATCAAACCCGCTGAGGCGGAAAAAAATGCCCAGGAGCTCGATCCGCTGGCGCTGTTTGGCGGTTCTTCTGCCCCCACGTC
GCCGGACGCGTTGAACAGCAACGATCCGCTCGGCCTGCTGATGGGCAGCGCTGTCCCCCTGGCACAGCCAGAGCCTCCGG
CTGCGGTGCCACCACCGGCGTCCCCATTACAGCAACCGGTGATGGCTGCCCCGGTGGAAGCACCGCAACCCAAAGCCGCG
CCGCAACCTGAGCCACAGTTTTCGCCTTCAACCCCACCGCCCTCACCGCAACCTCGTCCACGCCCGGCCAACCGCCTGGG
TATCGATCCGATTGCCTATCAGACTGCGCGTGCCCAAAACGGTAGCGCACCTGCGGGTGAGCGGTTGGAAGGCCCACTGT
TAGCCGCATTACTGCAGGGGGTGGGTCTGGATGACCTGCAGCCACAGCCACACTTTGATGAGCAGCAGCTCCGCCAGGCC
GGTCGGCTGCTGAGCCTGTTTTCTCAGGGGACCGTCGCCCTGCTCTCTTCCCGCTCAATCCTTAAGCGCGGTGTGAAGGC
CGAGATGACCATGATCCTCGACGAGGCCAATAACCCGTTCAAACTGCTGCCCTCGGGCAAAACGGTATTGATGCAGATGT
TCGGCAGCAAAATGCCGGGGTTTATGCCGCCGGAACAGGCGGTACGCGACGCACTGATCGACCTGCAGGCGCACCAGTTA
GGCATGATCGCCGGTATTCGCGCCATCATCGCCGCCATGCTGCAGTCGTTCAATCCGGATCGCCTCGAAGAGGAGGCGCG
CAAGGAAGGCGCGGCACCTCGTCTGTCCCTGCCGGCCAGCCGCAAGGCGGCGCTGTGGGATTACTTCGTGAAAAGCTATC
AGCAGACCTCCGGCGAAATCGAAGACGACTTTCACACCCTGTTCGGCGAAGCCTTCCTGCACGCCTATGACGTTGAAGTG
AATCAATATAAAGACTCACAGACCCAACCGGACGCGTAA
ATGCGATTTTCTATTGTCAAAAATAAAAGTGGCCAGGTTCCGCCACAGAGCAGCTGCGACTTTCTGCCGCCCGGCGGCAC
CATTGGCCGTAGCGTGGACAACAACCTGGTATTGCCGGACGAAGAGCGTGCCATCTCCCGGTTGCAGGCGATCGTACATA
TTTCTGCTGATGGCGAATGCCGCGTAACCAACCGTGGCAACGTCACCCGCGTGTTGCTGAACGATATTCCCCTGGAGCGC
GGCCGTCAGGTGGAGCTGCAGGATGGTGATATTCTCGGCATCGACGATTATCAGATCCAGGTCAGCTCCTTACAGCAAGC
GGCTGCACCGCAGGCTCAGCCGACAATTAAAACCGCCGACACCGCGCCAGTCACTACACCGGCTGCCAAAGAGAAAGCGG
CAGCCCCCATCCCGAATGAGATCTGGGACAGCCTGGTAGAAGAGTTCACGCCAGCCACGGCGGTGACTGCGCCCCCGGCA
CCGGTCATTAATCAGGACAGCCATCCGCTGCTGGAAACGCCGGAGCCTGAGATGAACCCGGCCGATCCGCTGGCGCAGTT
GGCGGGCGACGTCGAACTACGTCAACTGCAGTCGCAGCAAACCGATCCGGCAATGTTGTTCAACACCGACACCACCTTCG
AGCGCGATCCTATTTTGGCCGATACCACCCCAAGTGCGCTGTTGGCCGAAAAACACCCGACCACCAGCCAGGCTGCGCCG
ATCAAACCCGCTGAGGCGGAAAAAAATGCCCAGGAGCTCGATCCGCTGGCGCTGTTTGGCGGTTCTTCTGCCCCCACGTC
GCCGGACGCGTTGAACAGCAACGATCCGCTCGGCCTGCTGATGGGCAGCGCTGTCCCCCTGGCACAGCCAGAGCCTCCGG
CTGCGGTGCCACCACCGGCGTCCCCATTACAGCAACCGGTGATGGCTGCCCCGGTGGAAGCACCGCAACCCAAAGCCGCG
CCGCAACCTGAGCCACAGTTTTCGCCTTCAACCCCACCGCCCTCACCGCAACCTCGTCCACGCCCGGCCAACCGCCTGGG
TATCGATCCGATTGCCTATCAGACTGCGCGTGCCCAAAACGGTAGCGCACCTGCGGGTGAGCGGTTGGAAGGCCCACTGT
TAGCCGCATTACTGCAGGGGGTGGGTCTGGATGACCTGCAGCCACAGCCACACTTTGATGAGCAGCAGCTCCGCCAGGCC
GGTCGGCTGCTGAGCCTGTTTTCTCAGGGGACCGTCGCCCTGCTCTCTTCCCGCTCAATCCTTAAGCGCGGTGTGAAGGC
CGAGATGACCATGATCCTCGACGAGGCCAATAACCCGTTCAAACTGCTGCCCTCGGGCAAAACGGTATTGATGCAGATGT
TCGGCAGCAAAATGCCGGGGTTTATGCCGCCGGAACAGGCGGTACGCGACGCACTGATCGACCTGCAGGCGCACCAGTTA
GGCATGATCGCCGGTATTCGCGCCATCATCGCCGCCATGCTGCAGTCGTTCAATCCGGATCGCCTCGAAGAGGAGGCGCG
CAAGGAAGGCGCGGCACCTCGTCTGTCCCTGCCGGCCAGCCGCAAGGCGGCGCTGTGGGATTACTTCGTGAAAAGCTATC
AGCAGACCTCCGGCGAAATCGAAGACGACTTTCACACCCTGTTCGGCGAAGCCTTCCTGCACGCCTATGACGTTGAAGTG
AATCAATATAAAGACTCACAGACCCAACCGGACGCGTAA