Detailed information of component protein


Summary

Component ID T6CP002335
Component protein type TssB
T6SS ID (Type) T6SS00234 insolico (Type i3)
Strain Serratia proteamaculans 568
Replicon chromosome
Sequence Protein sequence (179 a.a.); Nucleotide sequence (537 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) SPRO_RS15370
Coordinate (Strand) 3303219..3303755 (+)
NCBI ID WP_012145725.1
RefSeq NC_009832
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 3.4e-57 14..163

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 179 a.a.    

>T6CP002335 NC_009832:3303219-3303755 [Serratia proteamaculans 568] [TssB]
MPNSKSRSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKSVDPQASVDERKFLEIDIDNFDERMKSLK
PRVAYQVDNTLTGEGKLNIDLTFESMEDFSPAAIARKVDALDNLLDARTQLSNLLSYMDGKNGAEELISKILQNPALLQS
LTDAPKPAATDDNNQRED*

  Nucleotide sequence: 537 bp    

>T6CP002335 NC_009832:3303219-3303755 [Serratia proteamaculans 568] [TssB]
ATGCCAAACTCGAAATCCCGTAGCGGGCAGAAATTTATCGCCCGCAACCGCGCACCGCGCGTACAGATTGAATACGATGT
CGAAATTTATGGCGCAGAGCGCAAAATCCAGTTGCCGTTCGTGATGGGCGTGATGGCAGACCTGGTGGGGAAATCGGTTG
ATCCACAGGCGAGCGTTGATGAGCGCAAGTTCCTGGAGATCGACATCGACAACTTCGATGAACGCATGAAATCGCTGAAA
CCGCGCGTTGCCTATCAGGTCGACAACACCCTGACCGGCGAAGGCAAACTGAATATCGATCTGACGTTTGAAAGCATGGA
AGACTTCTCCCCTGCGGCGATTGCCCGCAAGGTGGACGCGCTGGACAACCTGCTGGACGCCCGCACCCAGCTTTCCAACC
TGTTGTCTTATATGGATGGTAAAAACGGCGCTGAAGAACTGATCTCCAAAATCCTGCAAAACCCGGCCTTACTGCAATCC
CTGACCGATGCGCCGAAACCGGCCGCCACGGACGACAACAATCAGCGTGAGGACTAA