Detailed information of component protein
Summary
| Component ID | T6CP012750 |
| Component protein type | TagJ |
| T6SS ID (Type) | T6SS00234  (Type i3) |
| Strain | Serratia proteamaculans 568 |
| Replicon | chromosome |
| Sequence | Protein sequence (266 a.a.); Nucleotide sequence (798 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SPRO_RS15400 |
| Coordinate (Strand) | 3309795..3310592 (+) |
| NCBI ID | WP_083757604.1 |
| RefSeq | NC_009832 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 2.6e-40 | 141..259 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 266 a.a.
>T6CP012750 NC_009832:3309795-3310592 [Serratia proteamaculans 568] [TagJ]
MLQGGTVSAAIGAVENEIKARPADADLRAALVQLLCLAGNWQRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFA
GEAPPALLQQSQPWLQPMIQALRHDALGETEQAQALRDDALEAAPASAGQLTLAERPQPVAFDWLTDGDGRLGPVCELAL
NGTYYWLPFAEIAEIQFQAPQSAVDLVWSHALVRLNDGREQVCQLPARYPLNAGSDDALLLGKRTEWQALGEGPHYAGQG
LKTWLSENDEFPLHSLRHLSFNASA*
MLQGGTVSAAIGAVENEIKARPADADLRAALVQLLCLAGNWQRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFA
GEAPPALLQQSQPWLQPMIQALRHDALGETEQAQALRDDALEAAPASAGQLTLAERPQPVAFDWLTDGDGRLGPVCELAL
NGTYYWLPFAEIAEIQFQAPQSAVDLVWSHALVRLNDGREQVCQLPARYPLNAGSDDALLLGKRTEWQALGEGPHYAGQG
LKTWLSENDEFPLHSLRHLSFNASA*
Nucleotide sequence: 798 bp
>T6CP012750 NC_009832:3309795-3310592 [Serratia proteamaculans 568] [TagJ]
ATGTTGCAAGGCGGCACGGTCAGCGCCGCTATCGGCGCAGTGGAAAATGAAATCAAAGCGCGACCGGCGGATGCCGATCT
GCGTGCCGCTCTGGTGCAACTGCTGTGTCTGGCCGGCAACTGGCAGCGCGCCAATGCGCAGCTGAAATCCTGGCAGGCAT
TGAAGCCCATCGCCCAGCCCACCACATTGCTGTTAATGCAATCGGTCAACGCGGAACTGCAGCGTCAGGCGGTGTTCGCC
GGCGAGGCCCCTCCCGCGCTGCTGCAACAAAGTCAGCCCTGGTTGCAACCCATGATCCAGGCGTTGCGTCACGATGCCCT
GGGCGAAACCGAACAGGCGCAGGCATTGCGCGACGACGCGCTGGAAGCGGCACCGGCCAGTGCCGGGCAACTGACCCTGG
CTGAACGGCCACAGCCCGTGGCGTTTGATTGGTTGACCGACGGTGATGGTCGTCTCGGCCCGGTTTGCGAACTGGCATTG
AACGGCACCTATTACTGGCTGCCGTTCGCCGAGATTGCGGAAATTCAGTTCCAGGCCCCACAAAGCGCCGTCGATCTGGT
GTGGAGCCACGCACTGGTGCGACTGAACGACGGTCGCGAGCAGGTCTGCCAGCTGCCTGCCCGCTATCCCCTGAACGCAG
GCAGTGACGATGCGCTGTTGCTCGGCAAACGCACCGAATGGCAAGCGCTGGGCGAAGGGCCGCACTACGCCGGTCAGGGT
CTGAAAACCTGGCTGAGCGAGAACGATGAGTTCCCGCTACACAGCCTGCGCCACCTGAGTTTTAACGCGAGCGCCTGA
ATGTTGCAAGGCGGCACGGTCAGCGCCGCTATCGGCGCAGTGGAAAATGAAATCAAAGCGCGACCGGCGGATGCCGATCT
GCGTGCCGCTCTGGTGCAACTGCTGTGTCTGGCCGGCAACTGGCAGCGCGCCAATGCGCAGCTGAAATCCTGGCAGGCAT
TGAAGCCCATCGCCCAGCCCACCACATTGCTGTTAATGCAATCGGTCAACGCGGAACTGCAGCGTCAGGCGGTGTTCGCC
GGCGAGGCCCCTCCCGCGCTGCTGCAACAAAGTCAGCCCTGGTTGCAACCCATGATCCAGGCGTTGCGTCACGATGCCCT
GGGCGAAACCGAACAGGCGCAGGCATTGCGCGACGACGCGCTGGAAGCGGCACCGGCCAGTGCCGGGCAACTGACCCTGG
CTGAACGGCCACAGCCCGTGGCGTTTGATTGGTTGACCGACGGTGATGGTCGTCTCGGCCCGGTTTGCGAACTGGCATTG
AACGGCACCTATTACTGGCTGCCGTTCGCCGAGATTGCGGAAATTCAGTTCCAGGCCCCACAAAGCGCCGTCGATCTGGT
GTGGAGCCACGCACTGGTGCGACTGAACGACGGTCGCGAGCAGGTCTGCCAGCTGCCTGCCCGCTATCCCCTGAACGCAG
GCAGTGACGATGCGCTGTTGCTCGGCAAACGCACCGAATGGCAAGCGCTGGGCGAAGGGCCGCACTACGCCGGTCAGGGT
CTGAAAACCTGGCTGAGCGAGAACGATGAGTTCCCGCTACACAGCCTGCGCCACCTGAGTTTTAACGCGAGCGCCTGA