Detailed information of component protein


Summary

Component ID T6CP002334
Component protein type TssA
T6SS ID (Type) T6SS00234 insolico (Type i3)
Strain Serratia proteamaculans 568
Replicon chromosome
Sequence Protein sequence (342 a.a.); Nucleotide sequence (1026 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SPRO_RS15365
Coordinate (Strand) 3302089..3303114 (+)
NCBI ID WP_012145724.1
RefSeq NC_009832
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 6.9e-37 7..129
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 342 a.a.    

>T6CP002334 NC_009832:3302089-3303114 [Serratia proteamaculans 568] [TssA]
MAIDTLLAPVDAENPCGENLEYDTDFLAMEQAATGKSEQQFGSTIIPAEAPDWVQVERLATTLLMRTKDLRVMLCLTRAW
TQLRGLQGYADGLMLIHQALERYWDTLLPLLEFDGEADPLFRINVLADLGDKAALTTSVRAAPLLKGATGEISLRDAGAL
LDGSKLECPTFPGGRARLQDELSQPERPEAQLVIRIAETLAAIRTTVTRHLGESALPEMHNLTKIFALVAQFGQDSAPAS
ESAEQPNDAAVPPTSAAAAAPAATLNWRSAQIQSRDDAQLMLDKVKHYFRLHEPSHPAPLMIDRVQRLIALDFMQIIRDL
APDGLNQLETILGRPDNEENN*

  Nucleotide sequence: 1026 bp    

>T6CP002334 NC_009832:3302089-3303114 [Serratia proteamaculans 568] [TssA]
ATGGCTATCGACACCCTGTTAGCCCCGGTTGACGCAGAAAATCCCTGCGGCGAAAACCTGGAATATGACACCGATTTTCT
GGCGATGGAGCAGGCTGCGACCGGTAAGAGCGAGCAGCAGTTCGGCAGCACTATCATTCCGGCAGAAGCACCGGACTGGG
TGCAGGTGGAACGGCTCGCGACCACGCTGCTGATGCGTACCAAAGATTTACGGGTGATGCTGTGCCTGACCCGCGCCTGG
ACGCAACTGCGCGGATTGCAAGGTTACGCCGACGGTCTGATGCTGATCCACCAGGCGCTGGAGCGCTACTGGGACACGCT
GCTGCCGTTGCTGGAGTTCGACGGCGAGGCTGACCCGCTGTTTCGCATCAACGTGCTGGCCGATCTCGGCGACAAGGCCG
CGCTGACCACCAGCGTGCGCGCCGCGCCGCTGCTGAAAGGGGCTACCGGTGAAATCTCGCTGCGCGACGCCGGGGCCCTG
CTCGACGGCAGTAAGCTCGAGTGCCCGACCTTTCCTGGTGGCCGTGCGCGCCTGCAGGATGAACTGTCTCAGCCGGAGCG
CCCGGAGGCGCAATTGGTGATACGCATCGCCGAAACCCTCGCTGCCATCCGTACTACGGTCACTCGCCATTTAGGCGAAA
GCGCCCTGCCGGAAATGCACAACCTGACAAAAATTTTCGCCCTGGTCGCTCAGTTCGGCCAGGACAGCGCCCCGGCCAGC
GAGTCAGCCGAACAGCCAAATGACGCCGCCGTACCACCGACCAGCGCTGCCGCAGCGGCCCCGGCCGCCACGCTCAACTG
GCGCAGTGCGCAAATACAGTCACGCGACGACGCCCAACTGATGCTGGACAAGGTAAAACACTATTTCCGTCTTCATGAGC
CCAGCCACCCGGCGCCGCTGATGATCGACCGGGTACAGCGGCTGATTGCACTGGACTTTATGCAAATAATCCGCGATTTG
GCACCCGATGGTCTTAACCAACTGGAGACCATTCTAGGTCGCCCCGATAACGAGGAGAACAACTAG