Detailed information of component protein


Summary

Component ID T6CP002332
Component protein type TssL
T6SS ID (Type) T6SS00234 insolico (Type i3)
Strain Serratia proteamaculans 568
Replicon chromosome
Sequence Protein sequence (407 a.a.); Nucleotide sequence (1221 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SPRO_RS15350
Coordinate (Strand) 3296470..3297690 (+)
NCBI ID WP_012145721.1
RefSeq NC_009832
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.9e-67 13..215
OmpA PF00691.22 1.1e-13 283..380
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 407 a.a.    

>T6CP002332 NC_009832:3296470-3297690 [Serratia proteamaculans 568] [TssL]
MTQENNITPAGNPLVEAANPLLNAISQIRQSATHANPAQLRQQLIDKVRHFELQGQRANLPYEVIIGARYCLCTALDEAA
ALTPWGSSSVWSGSGLLVTFHNETWGGEKFFQLLAKLSQSPREHIQLLELINFCLLLGFEGRYRVMENGRSQLETMKQRL
LQLIRSVRGGYAPPLSPNALDLPVQQKLWRPLVPLWACVALTGFLASLLFIGLNWRLGDSTSPVLAAIYQTNLPQVAISN
PAPAAPPTLSLKSFLRKEIAEGLVVVRDEAQQSVVILKGDGLFDSAATTVRGNYIPVIDRIAAAMNGVSGKILVTGYSDN
LPIRSARFASNWELSLARADAVSAQLQKHLDNPQRVKAEGRGESNPVAPNNSKVNRALNRRVEITLLVAPENTQAEINGL
PQGNGK*

  Nucleotide sequence: 1221 bp    

>T6CP002332 NC_009832:3296470-3297690 [Serratia proteamaculans 568] [TssL]
ATGACTCAGGAAAATAACATAACGCCGGCAGGCAACCCGTTGGTAGAAGCCGCGAACCCTTTGCTGAACGCCATTTCGCA
AATCCGCCAATCGGCCACCCACGCCAATCCGGCGCAGCTGCGCCAGCAACTGATCGATAAAGTTCGCCACTTCGAACTCC
AGGGTCAGCGCGCCAACCTGCCGTATGAAGTGATTATCGGCGCACGTTATTGCCTGTGTACCGCGCTGGACGAAGCCGCC
GCGCTAACGCCCTGGGGCAGCAGCAGCGTCTGGTCCGGCAGCGGACTGTTGGTGACTTTCCACAACGAAACCTGGGGCGG
AGAGAAGTTCTTCCAACTGCTGGCCAAGCTGTCGCAAAGCCCACGCGAACACATCCAACTGCTGGAACTGATTAACTTCT
GCCTGCTGCTGGGGTTCGAAGGCCGCTATCGAGTGATGGAGAACGGCCGCTCGCAGTTGGAAACCATGAAGCAACGTCTG
CTGCAACTGATCCGCTCGGTACGCGGCGGTTACGCCCCGCCACTGTCCCCCAACGCACTGGATCTGCCGGTACAGCAAAA
ATTGTGGCGCCCTCTGGTGCCATTATGGGCCTGCGTAGCACTGACCGGTTTTCTGGCGTCGTTGCTGTTTATCGGCCTCA
ACTGGCGGCTGGGCGACAGCACCAGTCCGGTGCTGGCAGCCATTTATCAGACCAACCTGCCACAGGTTGCCATCAGCAAT
CCGGCACCGGCGGCACCACCGACGCTGAGCCTGAAAAGCTTCCTGCGCAAAGAAATTGCCGAAGGTCTGGTGGTGGTGCG
TGACGAAGCTCAGCAGAGCGTGGTGATCCTGAAAGGGGATGGCCTGTTCGACTCCGCCGCAACGACGGTGCGCGGCAACT
ATATCCCGGTCATTGACCGCATTGCCGCGGCGATGAACGGCGTCAGCGGCAAGATCCTGGTCACCGGCTACAGCGATAAT
CTGCCGATCCGCAGCGCACGCTTCGCTTCCAACTGGGAGTTGTCGCTGGCACGCGCCGACGCGGTCAGCGCCCAACTGCA
GAAACACCTCGACAACCCGCAACGGGTGAAGGCGGAAGGCCGCGGTGAAAGCAACCCGGTCGCACCGAACAATAGCAAAG
TGAACCGCGCGCTGAATCGCCGGGTAGAAATTACGCTGTTGGTTGCGCCAGAAAATACCCAGGCGGAAATCAACGGCTTG
CCGCAAGGAAACGGAAAGTAA