Detailed information of component protein
Summary
| Component ID | T6CP002336 |
| Component protein type | TssC |
| T6SS ID (Type) | T6SS00234  (Type i3) |
| Strain | Serratia proteamaculans 568 |
| Replicon | chromosome |
| Sequence | Protein sequence (502 a.a.); Nucleotide sequence (1506 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SPRO_RS15375 |
| Coordinate (Strand) | 3303759..3305264 (+) |
| NCBI ID | WP_012145726.1 |
| RefSeq | NC_009832 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| VipB | PF05943.14 | 3.7e-137 | 69..371 |
| VipB_2 | PF18945.2 | 3.8e-45 | 381..492 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 502 a.a.
>T6CP002336 NC_009832:3303759-3305264 [Serratia proteamaculans 568] [TssC]
MSNSPQQQKALQTSEAFSSDEFSALLNKEFRPKTDQAKEAVENAVKTLAQQALENTVTVSSDAYRTIQALIAEIDEKLSQ
QVNQIIHHAEFQKLEGAWHGLHYLVNNSETDEMLKIRFMSISKQELGRTLKRHKGVGWDQSPIFKKVYEEEYGQFGGEPF
GCLVGDYYFDHSPQDVELLGEMAKISAASHCPFIAGTAPSVMQMESWQELSNPRDLTKIFQNTEYAAWRSLRESEDARYL
GLVMPRFLARLPYGIRTNPVDEFDFEEETDGANHGNYTWTNAAYAMAANINRSFKEFGWCTAIRGVESGGAVENLPCHTF
PSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYYDADASANAQLSARLPYLFACCRF
AHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKSRKPLAAAEVQVEEIEDNPGYYSAKFFLRPHYQLE
GLTVSLRLVSKLPSLKQNDAS*
MSNSPQQQKALQTSEAFSSDEFSALLNKEFRPKTDQAKEAVENAVKTLAQQALENTVTVSSDAYRTIQALIAEIDEKLSQ
QVNQIIHHAEFQKLEGAWHGLHYLVNNSETDEMLKIRFMSISKQELGRTLKRHKGVGWDQSPIFKKVYEEEYGQFGGEPF
GCLVGDYYFDHSPQDVELLGEMAKISAASHCPFIAGTAPSVMQMESWQELSNPRDLTKIFQNTEYAAWRSLRESEDARYL
GLVMPRFLARLPYGIRTNPVDEFDFEEETDGANHGNYTWTNAAYAMAANINRSFKEFGWCTAIRGVESGGAVENLPCHTF
PSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYYDADASANAQLSARLPYLFACCRF
AHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKSRKPLAAAEVQVEEIEDNPGYYSAKFFLRPHYQLE
GLTVSLRLVSKLPSLKQNDAS*
Nucleotide sequence: 1506 bp
>T6CP002336 NC_009832:3303759-3305264 [Serratia proteamaculans 568] [TssC]
ATGAGCAACTCGCCTCAGCAACAAAAAGCGCTGCAGACCAGCGAAGCTTTCTCCAGCGATGAATTCAGCGCGCTGCTGAA
CAAAGAGTTTCGTCCCAAGACCGATCAGGCCAAGGAAGCGGTAGAAAATGCGGTAAAAACCCTGGCGCAGCAGGCGCTGG
AAAACACCGTGACGGTCTCCTCTGACGCCTATCGCACCATTCAGGCGCTGATCGCCGAAATCGACGAAAAACTGTCGCAA
CAGGTTAACCAGATTATCCACCACGCCGAATTCCAGAAGCTGGAAGGCGCCTGGCATGGCCTGCACTATCTGGTCAACAA
CTCCGAAACCGATGAAATGCTGAAAATCCGCTTTATGAGCATTTCCAAGCAGGAGCTGGGCCGCACGCTGAAGCGCCATA
AAGGTGTGGGCTGGGATCAGAGCCCCATCTTCAAGAAAGTGTACGAGGAAGAGTACGGCCAGTTCGGCGGCGAACCCTTC
GGTTGCCTGGTGGGCGATTACTACTTCGACCACAGCCCACAGGACGTAGAGTTGCTGGGTGAGATGGCGAAAATCAGTGC
CGCCTCCCACTGCCCCTTCATCGCCGGTACCGCACCGAGCGTGATGCAGATGGAATCCTGGCAGGAGCTGTCCAACCCAC
GCGATTTGACCAAGATCTTCCAAAATACCGAATACGCCGCCTGGCGCAGCCTGCGTGAATCGGAAGATGCCCGCTATCTG
GGCCTGGTAATGCCGCGATTCCTGGCGCGCCTGCCGTATGGCATCCGAACCAATCCGGTTGACGAGTTCGACTTTGAGGA
AGAAACCGACGGCGCGAACCACGGTAACTACACCTGGACCAACGCCGCCTACGCCATGGCCGCCAACATCAACCGTTCGT
TCAAAGAGTTCGGTTGGTGTACCGCGATCCGTGGGGTGGAGTCTGGCGGTGCGGTAGAGAACCTGCCGTGCCACACCTTC
CCAAGCGACGACGGCGGCGTGGACATGAAGTGCCCGACCGAGATCGCCATCAGCGATCGTCGCGAGGCCGAGCTGGCCAA
GAACGGCTTCATGCCGTTGGTACACCGGAAAAACTCCGACTTTGCCGCCTTTATCGGTGCCCAGTCGCTGCAAAAGCCGG
CCGAATACTACGACGCCGATGCATCTGCCAATGCTCAACTCTCCGCCCGTCTGCCTTATCTGTTCGCCTGCTGCCGCTTC
GCGCATTACCTGAAGTGCATCGTCCGTGACAAGATCGGTTCTTTCCGCGAGCGCGACGATATGGAACGCTGGTTAAACGA
CTGGATCATGAACTACGTGGATGGCGATCCGGCCAACTCCTCGCAGGAAACCAAGTCGCGCAAACCGCTGGCCGCTGCGG
AAGTTCAGGTGGAAGAGATCGAAGACAACCCGGGCTACTACAGCGCCAAGTTCTTCCTGCGCCCACATTACCAATTGGAA
GGCTTGACCGTCTCCCTGCGTCTGGTATCGAAACTGCCCTCACTGAAGCAGAACGACGCATCCTGA
ATGAGCAACTCGCCTCAGCAACAAAAAGCGCTGCAGACCAGCGAAGCTTTCTCCAGCGATGAATTCAGCGCGCTGCTGAA
CAAAGAGTTTCGTCCCAAGACCGATCAGGCCAAGGAAGCGGTAGAAAATGCGGTAAAAACCCTGGCGCAGCAGGCGCTGG
AAAACACCGTGACGGTCTCCTCTGACGCCTATCGCACCATTCAGGCGCTGATCGCCGAAATCGACGAAAAACTGTCGCAA
CAGGTTAACCAGATTATCCACCACGCCGAATTCCAGAAGCTGGAAGGCGCCTGGCATGGCCTGCACTATCTGGTCAACAA
CTCCGAAACCGATGAAATGCTGAAAATCCGCTTTATGAGCATTTCCAAGCAGGAGCTGGGCCGCACGCTGAAGCGCCATA
AAGGTGTGGGCTGGGATCAGAGCCCCATCTTCAAGAAAGTGTACGAGGAAGAGTACGGCCAGTTCGGCGGCGAACCCTTC
GGTTGCCTGGTGGGCGATTACTACTTCGACCACAGCCCACAGGACGTAGAGTTGCTGGGTGAGATGGCGAAAATCAGTGC
CGCCTCCCACTGCCCCTTCATCGCCGGTACCGCACCGAGCGTGATGCAGATGGAATCCTGGCAGGAGCTGTCCAACCCAC
GCGATTTGACCAAGATCTTCCAAAATACCGAATACGCCGCCTGGCGCAGCCTGCGTGAATCGGAAGATGCCCGCTATCTG
GGCCTGGTAATGCCGCGATTCCTGGCGCGCCTGCCGTATGGCATCCGAACCAATCCGGTTGACGAGTTCGACTTTGAGGA
AGAAACCGACGGCGCGAACCACGGTAACTACACCTGGACCAACGCCGCCTACGCCATGGCCGCCAACATCAACCGTTCGT
TCAAAGAGTTCGGTTGGTGTACCGCGATCCGTGGGGTGGAGTCTGGCGGTGCGGTAGAGAACCTGCCGTGCCACACCTTC
CCAAGCGACGACGGCGGCGTGGACATGAAGTGCCCGACCGAGATCGCCATCAGCGATCGTCGCGAGGCCGAGCTGGCCAA
GAACGGCTTCATGCCGTTGGTACACCGGAAAAACTCCGACTTTGCCGCCTTTATCGGTGCCCAGTCGCTGCAAAAGCCGG
CCGAATACTACGACGCCGATGCATCTGCCAATGCTCAACTCTCCGCCCGTCTGCCTTATCTGTTCGCCTGCTGCCGCTTC
GCGCATTACCTGAAGTGCATCGTCCGTGACAAGATCGGTTCTTTCCGCGAGCGCGACGATATGGAACGCTGGTTAAACGA
CTGGATCATGAACTACGTGGATGGCGATCCGGCCAACTCCTCGCAGGAAACCAAGTCGCGCAAACCGCTGGCCGCTGCGG
AAGTTCAGGTGGAAGAGATCGAAGACAACCCGGGCTACTACAGCGCCAAGTTCTTCCTGCGCCCACATTACCAATTGGAA
GGCTTGACCGTCTCCCTGCGTCTGGTATCGAAACTGCCCTCACTGAAGCAGAACGACGCATCCTGA