Detailed information of component protein


Summary

Component ID T6CP002342
Component protein type TssI
T6SS ID (Type) T6SS00234 insolico (Type i3)
Strain Serratia proteamaculans 568
Replicon chromosome
Sequence Protein sequence (646 a.a.); Nucleotide sequence (1938 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SPRO_RS15430
Coordinate (Strand) 3318424..3320361 (+)
NCBI ID WP_012145737.1
RefSeq NC_009832
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 5.3e-89 24..330
Phage_base_V PF04717.14 2.5e-14 385..452
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 646 a.a.    

>T6CP002342 NC_009832:3318424-3320361 [Serratia proteamaculans 568] [TssI]
MLDRIIAHTPLGQESLLFRSLEGTEALSSPFDFAIELLSKNARLDRKALLGQPLTLEIPTQGFLGPPRYLNGKITSIAVS
SEEIGGTRYAVYNLHVQPDLWPMTKDRNFRIFQEQTVPQIVKTLLTEHNVQLEDQLTGDYRLWGYCVQYNESSFNFISRL
MELEGIYYYFKHEMDKHTLVLGDAPHHHQPYPGYEMIPYHLTPSGGSTSEEGISQWTLSDHVTPGIYSLDDYDFRKPNAW
LFQARQNPASPTPGQIDVYDWPGRYTEHQQGEFYARIRQEAWQAEHQQIEGTATALGIAPGSTFTLYNAPHADDNREYLT
LQAKYHLKENRYASGDDQHSEHRIDFTVLPADIPWHPAQQASWPKTHGPQTAKVVGPAGESIWTDKYGRIKVKFHWDRFG
PKDDGSSCWVRVSSAWAGQGYGGVQIPRVNDEVVVDFINGDPDRPIVTGRVYNDASMPPWALPAAATQMGFMSRTKDGTA
DNANALRFEDKAGSEQVWIQAERNMDTQVKNDESHTIDKNHTHFVGANEEQRVIEDQTIAVKGHSTMLTEHTRTDNVIGA
LVIGSGTSIRLECGKSVLELTKDGDINITGINFNITVDQSGEINTSSGKLNLNPSSGQKKTDAPGDEHQKTIQSQIDSFF
SQEEK*

  Nucleotide sequence: 1938 bp    

>T6CP002342 NC_009832:3318424-3320361 [Serratia proteamaculans 568] [TssI]
ATGTTGGATCGTATTATTGCGCATACGCCACTGGGCCAGGAGTCATTACTGTTCCGTTCGCTGGAAGGGACTGAAGCCCT
TTCCTCACCCTTCGATTTCGCCATCGAACTGCTGAGCAAAAACGCCCGCCTCGACCGCAAAGCGCTGCTGGGCCAACCCC
TGACGCTGGAGATCCCGACCCAGGGTTTTCTTGGCCCGCCCCGCTACCTGAACGGCAAGATCACGTCGATCGCCGTCAGC
AGCGAAGAGATCGGCGGCACCCGTTATGCGGTGTACAACCTGCACGTGCAGCCGGATCTGTGGCCGATGACCAAGGACCG
CAACTTCCGCATCTTCCAGGAACAGACGGTGCCGCAGATCGTCAAAACCCTGCTGACCGAACATAATGTTCAGTTGGAAG
ACCAGCTCACGGGCGACTACCGCCTGTGGGGCTATTGCGTGCAGTACAACGAGAGCAGCTTCAACTTCATCAGCAGGCTG
ATGGAGCTGGAGGGTATCTATTACTATTTCAAACATGAGATGGACAAGCACACCCTGGTGCTGGGCGATGCGCCTCACCA
TCATCAGCCCTATCCGGGCTATGAGATGATCCCTTACCATCTGACGCCGTCTGGCGGCAGTACCAGCGAAGAAGGCATCA
GCCAGTGGACCCTGTCCGATCACGTCACGCCGGGTATTTACAGCCTCGACGATTACGACTTCCGCAAACCCAATGCCTGG
CTGTTCCAGGCCCGTCAGAACCCCGCCTCACCGACGCCGGGCCAGATTGACGTTTACGACTGGCCGGGCCGCTATACCGA
GCATCAGCAGGGGGAATTCTACGCCCGTATCCGTCAGGAAGCCTGGCAGGCCGAGCATCAGCAGATTGAAGGCACCGCTA
CCGCACTGGGCATTGCCCCCGGCAGCACCTTCACGCTGTATAACGCCCCGCATGCGGACGACAACCGGGAATATCTGACG
CTGCAGGCCAAATATCACCTGAAGGAAAACCGCTACGCCAGCGGCGACGATCAGCACAGCGAACACCGTATCGATTTCAC
CGTGCTGCCGGCGGATATTCCCTGGCACCCGGCGCAACAGGCCAGTTGGCCAAAAACTCACGGCCCGCAGACGGCAAAAG
TGGTCGGCCCGGCCGGTGAGTCGATCTGGACCGACAAATACGGCCGCATCAAGGTGAAATTCCACTGGGATCGCTTCGGG
CCGAAAGACGACGGCAGCTCCTGCTGGGTGCGCGTGTCCAGCGCCTGGGCCGGCCAGGGTTATGGCGGAGTACAGATCCC
GCGCGTCAACGACGAAGTGGTGGTGGACTTTATCAATGGCGATCCGGACCGGCCGATCGTGACCGGTCGCGTGTATAACG
ACGCCAGTATGCCGCCCTGGGCACTGCCGGCCGCCGCAACCCAGATGGGTTTTATGAGCCGCACTAAGGATGGCACCGCC
GACAACGCCAACGCCCTGCGCTTCGAGGATAAAGCCGGTTCGGAACAGGTATGGATCCAGGCGGAACGCAACATGGACAC
CCAGGTGAAGAACGATGAGAGCCATACCATCGATAAGAACCATACGCATTTCGTTGGTGCTAATGAGGAACAGCGGGTTA
TCGAAGACCAGACTATTGCGGTTAAAGGCCACTCAACCATGCTGACTGAGCATACGCGTACAGATAACGTTATCGGCGCA
TTGGTTATTGGCTCTGGTACGTCGATTCGTCTTGAATGTGGCAAAAGCGTGTTGGAACTGACCAAAGATGGTGACATTAA
TATTACCGGTATTAATTTTAATATTACCGTTGACCAATCTGGCGAAATTAACACATCCAGCGGCAAGCTAAATCTCAACC
CTTCGAGTGGCCAGAAGAAAACCGATGCGCCAGGCGACGAACATCAAAAAACAATTCAAAGTCAAATAGACAGTTTTTTC
TCACAGGAAGAAAAGTAA