Detailed information of component protein
Summary
| Component ID | T6CP002337 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00234  (Type i3) |
| Strain | Serratia proteamaculans 568 |
| Replicon | chromosome |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SPRO_RS15380 |
| Coordinate (Strand) | 3305545..3306027 (+) |
| NCBI ID | WP_012145727.1 |
| RefSeq | NC_009832 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 3.6e-36 | 6..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 161 a.a.
>T6CP002337 NC_009832:3305545-3306027 [Serratia proteamaculans 568] [TssD]
MAIDMFLKVEGASGESKDSNHKGWTDITSFSWGASQPGNMSVGGGGGAGKVCFNDLHVNALVDKSTPALLKHCSSGKHLT
KIELSVCKAGGSQVEYVKITLDDVLVTAVQYTGAGGEDTVGVTYSFQASKVKQQYWEQSDKGGKGAESSAGWNIKENREA
*
MAIDMFLKVEGASGESKDSNHKGWTDITSFSWGASQPGNMSVGGGGGAGKVCFNDLHVNALVDKSTPALLKHCSSGKHLT
KIELSVCKAGGSQVEYVKITLDDVLVTAVQYTGAGGEDTVGVTYSFQASKVKQQYWEQSDKGGKGAESSAGWNIKENREA
*
Nucleotide sequence: 483 bp
>T6CP002337 NC_009832:3305545-3306027 [Serratia proteamaculans 568] [TssD]
ATGGCTATTGATATGTTCCTGAAAGTTGAAGGTGCCAGCGGTGAATCTAAAGATTCAAATCACAAAGGCTGGACCGACAT
TACTTCTTTCTCCTGGGGCGCTTCTCAACCAGGCAACATGAGCGTGGGTGGTGGCGGTGGTGCCGGTAAGGTTTGCTTTA
ACGATCTGCATGTCAATGCGCTGGTCGACAAATCAACCCCGGCGCTGCTGAAACACTGCTCCAGCGGTAAACACCTGACC
AAGATTGAACTGTCAGTCTGTAAAGCCGGTGGCAGCCAGGTTGAATACGTCAAAATCACTCTGGACGACGTGCTGGTCAC
TGCCGTGCAGTACACCGGTGCCGGCGGTGAAGACACCGTGGGCGTAACCTACTCCTTCCAGGCATCAAAAGTGAAACAGC
AGTACTGGGAGCAGAGTGATAAAGGTGGTAAAGGCGCAGAAAGCAGCGCAGGTTGGAATATCAAGGAAAACCGCGAAGCT
TAA
ATGGCTATTGATATGTTCCTGAAAGTTGAAGGTGCCAGCGGTGAATCTAAAGATTCAAATCACAAAGGCTGGACCGACAT
TACTTCTTTCTCCTGGGGCGCTTCTCAACCAGGCAACATGAGCGTGGGTGGTGGCGGTGGTGCCGGTAAGGTTTGCTTTA
ACGATCTGCATGTCAATGCGCTGGTCGACAAATCAACCCCGGCGCTGCTGAAACACTGCTCCAGCGGTAAACACCTGACC
AAGATTGAACTGTCAGTCTGTAAAGCCGGTGGCAGCCAGGTTGAATACGTCAAAATCACTCTGGACGACGTGCTGGTCAC
TGCCGTGCAGTACACCGGTGCCGGCGGTGAAGACACCGTGGGCGTAACCTACTCCTTCCAGGCATCAAAAGTGAAACAGC
AGTACTGGGAGCAGAGTGATAAAGGTGGTAAAGGCGCAGAAAGCAGCGCAGGTTGGAATATCAAGGAAAACCGCGAAGCT
TAA