Detailed information of component protein
Summary
| Component ID | T6CP002331 |
| Component protein type | TssK |
| T6SS ID (Type) | T6SS00234  (Type i3) |
| Strain | Serratia proteamaculans 568 |
| Replicon | chromosome |
| Sequence | Protein sequence (449 a.a.); Nucleotide sequence (1347 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SPRO_RS15345 |
| Coordinate (Strand) | 3295120..3296466 (+) |
| NCBI ID | WP_012145720.1 |
| RefSeq | NC_009832 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VasE | PF05936.14 | 2.3e-149 | 19..442 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 449 a.a.
>T6CP002331 NC_009832:3295120-3296466 [Serratia proteamaculans 568] [TssK]
MKDAHKVVWTEGMFLRPHHFQQAENYLENYMRNWGQAHQGYFWGFLQLDLDQTLLRQGKIALNAASGIMPDGTPFRFSGA
QQAPAPLAIAENKTGENVVLALPTYRAGREDVIFQEAPDALARYLAYENEVDDLNAVSVGSAALQFGQLRLRLMLESELN
AEWTALGVTRVLEKRGDASLRLDQVQIPPMLNCQGSPVLKTFINDLQGLLQQRSQQMSQRLLQPGRGGSSEMVDFMLLQL
INRHLGQVSHAYHLDHLHPERLFADWLQFATELASFSAQRTPEARLPVYDHDNLALCFGKLMLLLRQGLSVVLEDNAIQL
TLVERSHGLNIATVQDTKMMRDFGFVLAVRADVAAEVLLTHFPAQMKIAPVTRIRDLVQLQLPGIGLRTMPAAPRQIPYH
AGYTYFELEKGSDLWKQMEKSSAFALHLAGDFPGLDMEFWAIRSHTDR*
MKDAHKVVWTEGMFLRPHHFQQAENYLENYMRNWGQAHQGYFWGFLQLDLDQTLLRQGKIALNAASGIMPDGTPFRFSGA
QQAPAPLAIAENKTGENVVLALPTYRAGREDVIFQEAPDALARYLAYENEVDDLNAVSVGSAALQFGQLRLRLMLESELN
AEWTALGVTRVLEKRGDASLRLDQVQIPPMLNCQGSPVLKTFINDLQGLLQQRSQQMSQRLLQPGRGGSSEMVDFMLLQL
INRHLGQVSHAYHLDHLHPERLFADWLQFATELASFSAQRTPEARLPVYDHDNLALCFGKLMLLLRQGLSVVLEDNAIQL
TLVERSHGLNIATVQDTKMMRDFGFVLAVRADVAAEVLLTHFPAQMKIAPVTRIRDLVQLQLPGIGLRTMPAAPRQIPYH
AGYTYFELEKGSDLWKQMEKSSAFALHLAGDFPGLDMEFWAIRSHTDR*
Nucleotide sequence: 1347 bp
>T6CP002331 NC_009832:3295120-3296466 [Serratia proteamaculans 568] [TssK]
ATGAAAGATGCTCATAAGGTCGTCTGGACTGAAGGGATGTTTTTGCGCCCTCATCATTTCCAGCAGGCGGAAAACTATCT
CGAAAACTACATGCGTAATTGGGGCCAGGCCCACCAAGGTTATTTTTGGGGCTTCCTCCAGCTGGATTTGGATCAAACCT
TGCTGCGTCAGGGCAAAATTGCGCTTAACGCCGCTAGTGGCATCATGCCGGACGGCACGCCCTTTCGTTTTTCCGGTGCC
CAACAGGCGCCTGCTCCGCTGGCCATTGCCGAAAACAAGACCGGCGAAAACGTGGTTCTGGCATTGCCAACCTACCGCGC
GGGCCGTGAAGACGTGATTTTTCAGGAAGCACCGGACGCGCTGGCGCGTTATCTGGCCTATGAAAACGAAGTCGACGACC
TGAACGCCGTTTCGGTCGGCAGCGCGGCATTGCAGTTTGGTCAGCTGCGTCTACGTCTGATGCTGGAAAGCGAACTCAAT
GCCGAATGGACGGCCCTCGGCGTAACCCGGGTGCTGGAAAAACGCGGTGACGCCAGCCTGCGTCTCGATCAGGTGCAAAT
TCCGCCGATGCTGAACTGTCAGGGAAGCCCGGTGCTGAAAACCTTTATCAACGATCTGCAAGGCCTGCTGCAACAGCGTA
GCCAGCAGATGAGTCAGCGCCTGCTGCAGCCGGGGCGCGGCGGCAGTTCCGAGATGGTCGATTTCATGCTGTTGCAACTG
ATTAACCGCCATCTCGGCCAGGTGAGCCACGCTTACCATCTCGATCACCTGCACCCGGAACGCCTGTTCGCCGACTGGCT
GCAGTTCGCCACCGAGCTAGCCAGCTTCTCGGCGCAGCGCACACCGGAAGCCCGGCTGCCGGTGTACGACCATGACAACC
TGGCGCTGTGTTTCGGCAAATTGATGCTGTTGCTGCGCCAGGGGCTGTCGGTGGTACTGGAAGACAACGCCATCCAACTG
ACGCTGGTCGAACGCTCGCATGGCCTGAACATTGCCACCGTACAAGACACCAAAATGATGCGCGACTTCGGTTTCGTGCT
GGCGGTACGTGCCGATGTCGCCGCCGAAGTGCTGCTGACTCACTTCCCGGCGCAAATGAAGATTGCCCCGGTAACGCGTA
TTCGCGATCTGGTGCAGTTGCAACTGCCAGGCATCGGGCTGCGCACCATGCCGGCGGCACCACGCCAAATCCCCTATCAC
GCGGGTTATACCTATTTCGAATTGGAAAAAGGCAGTGACCTGTGGAAGCAGATGGAAAAATCCAGCGCCTTCGCTCTGCA
CCTGGCCGGCGACTTCCCGGGTCTGGATATGGAATTCTGGGCGATTCGCAGCCATACGGACCGGTAA
ATGAAAGATGCTCATAAGGTCGTCTGGACTGAAGGGATGTTTTTGCGCCCTCATCATTTCCAGCAGGCGGAAAACTATCT
CGAAAACTACATGCGTAATTGGGGCCAGGCCCACCAAGGTTATTTTTGGGGCTTCCTCCAGCTGGATTTGGATCAAACCT
TGCTGCGTCAGGGCAAAATTGCGCTTAACGCCGCTAGTGGCATCATGCCGGACGGCACGCCCTTTCGTTTTTCCGGTGCC
CAACAGGCGCCTGCTCCGCTGGCCATTGCCGAAAACAAGACCGGCGAAAACGTGGTTCTGGCATTGCCAACCTACCGCGC
GGGCCGTGAAGACGTGATTTTTCAGGAAGCACCGGACGCGCTGGCGCGTTATCTGGCCTATGAAAACGAAGTCGACGACC
TGAACGCCGTTTCGGTCGGCAGCGCGGCATTGCAGTTTGGTCAGCTGCGTCTACGTCTGATGCTGGAAAGCGAACTCAAT
GCCGAATGGACGGCCCTCGGCGTAACCCGGGTGCTGGAAAAACGCGGTGACGCCAGCCTGCGTCTCGATCAGGTGCAAAT
TCCGCCGATGCTGAACTGTCAGGGAAGCCCGGTGCTGAAAACCTTTATCAACGATCTGCAAGGCCTGCTGCAACAGCGTA
GCCAGCAGATGAGTCAGCGCCTGCTGCAGCCGGGGCGCGGCGGCAGTTCCGAGATGGTCGATTTCATGCTGTTGCAACTG
ATTAACCGCCATCTCGGCCAGGTGAGCCACGCTTACCATCTCGATCACCTGCACCCGGAACGCCTGTTCGCCGACTGGCT
GCAGTTCGCCACCGAGCTAGCCAGCTTCTCGGCGCAGCGCACACCGGAAGCCCGGCTGCCGGTGTACGACCATGACAACC
TGGCGCTGTGTTTCGGCAAATTGATGCTGTTGCTGCGCCAGGGGCTGTCGGTGGTACTGGAAGACAACGCCATCCAACTG
ACGCTGGTCGAACGCTCGCATGGCCTGAACATTGCCACCGTACAAGACACCAAAATGATGCGCGACTTCGGTTTCGTGCT
GGCGGTACGTGCCGATGTCGCCGCCGAAGTGCTGCTGACTCACTTCCCGGCGCAAATGAAGATTGCCCCGGTAACGCGTA
TTCGCGATCTGGTGCAGTTGCAACTGCCAGGCATCGGGCTGCGCACCATGCCGGCGGCACCACGCCAAATCCCCTATCAC
GCGGGTTATACCTATTTCGAATTGGAAAAAGGCAGTGACCTGTGGAAGCAGATGGAAAAATCCAGCGCCTTCGCTCTGCA
CCTGGCCGGCGACTTCCCGGGTCTGGATATGGAATTCTGGGCGATTCGCAGCCATACGGACCGGTAA