Detailed information of component protein


Summary

Component ID T6CP002341
Component protein type TssH
T6SS ID (Type) T6SS00234 insolico (Type i3)
Strain Serratia proteamaculans 568
Replicon chromosome
Sequence Protein sequence (888 a.a.); Nucleotide sequence (2664 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SPRO_RS15420
Coordinate (Strand) 3314184..3316847 (+)
NCBI ID WP_012145735.1
RefSeq NC_009832
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.4e-38 618..783
AAA_lid_9 PF17871.3 3.7e-26 363..455
ClpB_D2-small PF10431.11 6e-14 791..866
AAA PF00004.31 1.8e-09 224..357
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 888 a.a.    

>T6CP002341 NC_009832:3314184-3316847 [Serratia proteamaculans 568] [TssH]
MSEISRSVLFGKLDSLLFTSLESATAFCKLRGNPYVELAHWLHQLMQAPEADLQQVIRHFALDEGQLARDIVEALDRLPR
GASAISDLSEHIDSAVERAWVYGSLKFGAAQIRGGHLLLGVLKTYSLRHLLKAISSQFDRINADLLMEQFATITAHSAEN
SLTASAQADTTPTAAQTGGSVLAQYAQDLTAKARNGEIDPVTGRDEEIRQIVDILMRRRQNNPLLTGEAGVGKTAVVEGL
ALRIVAGDVPPQLRDVQLYLLDIGMLQAGAGVKGEFEKRLQTVIDEVQSSPTPIILFIDEIHTLIGAGGPQGTGDAANLL
KPALARGQLRTVGATTWSEYKKYIEKDPALTRRFQVVQVHEPSEDKALLMLRSTVSPLEQHHRVLLLDEAVDAAVRLSHR
YIPARQLPDKAVALLDTACARVAVSQHAEPAQVEDCRHRIEALQIEWDIARREAKVGIGNPQRPQDIEAQLALLQQQLEQ
LTARWQEELALIQQIIDLRAQLHREEIEAEPTDEATEEPQPAPSADELRAQLAQLQQQLGELQGEAPLIFAAVDANVVAA
VVSDWTGIPLGRMVKNEIDAVLQLADTLNQRVIGQRHALDLIARRVRTSRARLDDPNKPVGVFLLAGPSGVGKTETALAL
AETLYGGEQNVITINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGW
MEDGEGRHIDFRNTIIILTSNVGTDLIAGLCSDADLMPEPEALSGALREPLLSVFPAALLGRLLVVPYYPLTDATLGNIV
RLQLGRVQRRLAENHDIACTFDDAVIEQIVSRCTEVESGGRMVDAILTNTLLPQISHTLLTGSANDQRYRQLHIALQQNE
FICQFQA*

  Nucleotide sequence: 2664 bp    

>T6CP002341 NC_009832:3314184-3316847 [Serratia proteamaculans 568] [TssH]
ATGTCTGAAATCAGCCGCTCGGTATTATTTGGCAAACTCGATAGCCTGTTATTCACCTCTCTGGAAAGTGCGACGGCGTT
TTGCAAGCTGCGCGGTAACCCCTACGTTGAGCTGGCGCACTGGCTGCATCAACTGATGCAGGCACCGGAGGCGGACCTGC
AACAGGTGATCCGCCACTTTGCGCTGGATGAGGGGCAACTGGCGCGTGACATCGTCGAGGCGCTCGATCGCCTGCCGCGC
GGTGCCAGCGCGATTTCCGATCTGTCCGAACATATCGACAGCGCGGTGGAACGGGCCTGGGTTTATGGCTCACTGAAATT
CGGTGCTGCGCAGATCCGCGGCGGCCACCTGCTGCTCGGCGTCCTGAAAACCTACAGCCTGCGCCACTTGCTGAAAGCCA
TCTCCTCACAGTTTGATCGCATCAACGCCGATCTGCTGATGGAGCAATTTGCCACTATCACCGCCCACTCGGCGGAAAAC
AGCCTGACGGCGAGCGCCCAGGCCGACACCACGCCGACGGCAGCGCAGACCGGTGGCAGCGTGCTGGCGCAATATGCTCA
GGATTTGACGGCCAAGGCGCGTAATGGCGAGATTGACCCGGTGACCGGGCGTGACGAGGAAATCCGCCAGATTGTCGATA
TTCTGATGCGTCGCCGCCAGAACAACCCGCTGCTGACCGGTGAGGCCGGGGTTGGCAAAACCGCCGTGGTCGAAGGCCTG
GCGCTGCGTATCGTGGCCGGTGACGTTCCGCCACAGCTGCGCGACGTCCAGCTGTATCTGCTGGATATCGGCATGCTGCA
GGCCGGGGCTGGGGTGAAGGGCGAGTTCGAAAAACGCCTGCAAACGGTGATTGACGAAGTTCAATCCAGCCCCACCCCGA
TCATTTTGTTTATCGATGAGATCCATACGCTGATTGGTGCCGGTGGCCCACAGGGCACCGGCGACGCAGCCAACCTGTTG
AAGCCGGCGCTGGCACGCGGCCAATTACGTACCGTCGGGGCCACTACCTGGTCGGAATACAAAAAATACATTGAGAAAGA
TCCGGCGCTGACCCGCCGTTTCCAGGTGGTGCAGGTGCATGAACCGAGCGAAGACAAAGCGCTGCTGATGCTGCGCAGCA
CCGTCAGCCCGCTGGAACAGCACCACCGCGTGCTGCTGCTCGATGAGGCAGTCGACGCCGCCGTGCGCCTGTCGCATCGC
TACATCCCGGCACGCCAGTTGCCGGACAAGGCCGTGGCGCTGCTGGATACCGCCTGCGCCCGCGTGGCGGTCAGCCAACA
TGCCGAGCCGGCCCAGGTGGAAGACTGCCGTCACCGCATTGAAGCGTTGCAGATTGAATGGGATATCGCCCGGCGCGAAG
CCAAGGTCGGTATCGGCAATCCGCAGCGCCCACAGGATATCGAGGCTCAGTTGGCACTGTTGCAACAACAACTCGAGCAG
CTCACTGCCCGCTGGCAGGAGGAGTTGGCGCTGATCCAACAGATTATCGACCTGCGCGCCCAGTTGCATCGGGAAGAAAT
TGAGGCTGAACCGACTGACGAGGCCACCGAGGAGCCACAGCCCGCGCCCTCTGCCGATGAACTGCGCGCGCAATTGGCGC
AGTTGCAGCAACAGCTTGGCGAACTGCAGGGCGAGGCCCCGCTGATTTTCGCCGCCGTCGATGCCAACGTGGTGGCCGCC
GTGGTGTCCGACTGGACCGGCATCCCGCTGGGCCGCATGGTGAAAAACGAGATCGACGCGGTACTGCAATTGGCGGATAC
GCTGAACCAGCGGGTTATCGGCCAACGGCATGCACTGGATCTGATCGCCCGTCGGGTACGCACCTCACGCGCGCGGCTGG
ACGATCCGAACAAGCCGGTCGGGGTTTTCCTGTTGGCAGGCCCTTCCGGCGTAGGGAAAACCGAAACCGCGCTGGCGCTG
GCGGAAACGCTGTACGGCGGCGAGCAGAACGTGATTACCATCAACATGAGCGAGTTCCAGGAGTCGCATACCGTTTCAAC
CCTGAAAGGTGCCCCTCCCGGCTATGTGGGTTACGGCGAGGGTGGCGTGCTGACCGAAGCGGTGCGCCGTCGCCCTTACA
GCGTGGTGCTGCTGGACGAAATAGAAAAAGCCCACCCGGACGTGCACGAGATCTTCTTCCAGGTGTTCGACAAAGGCTGG
ATGGAGGATGGCGAAGGCCGCCACATCGATTTCCGTAACACCATCATTATTCTGACCTCTAACGTCGGCACCGACCTGAT
CGCCGGGCTGTGCAGCGATGCGGACCTGATGCCGGAGCCGGAGGCACTGAGCGGCGCCCTGCGCGAACCGCTGCTGTCGG
TATTCCCGGCGGCGCTGCTCGGCCGCTTGCTGGTGGTGCCTTACTACCCACTGACCGACGCCACGCTGGGCAATATTGTG
CGCCTGCAACTGGGACGAGTGCAGCGCCGACTGGCGGAGAACCACGATATCGCCTGTACCTTCGACGATGCGGTGATCGA
GCAAATCGTCAGCCGCTGCACCGAGGTGGAGTCCGGCGGCCGCATGGTCGACGCTATTTTGACCAACACCCTGCTGCCGC
AGATCAGCCACACCTTACTGACCGGCAGCGCCAACGATCAGCGCTATCGCCAACTGCATATCGCGCTGCAGCAAAACGAG
TTTATTTGTCAATTTCAGGCATAA