Detailed information of component protein


Summary

Component ID T6CP011626
Component protein type PAAR
T6SS ID (Type) T6SS00234 insolico (Type i3)
Strain Serratia proteamaculans 568
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SPRO_RS15440
Coordinate (Strand) 3321185..3322519 (+)
NCBI ID WP_012145739.1
RefSeq NC_009832
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ART PF01129.20 1.3e-15 274..441
PAAR_motif PF05488.15 3.3e-14 72..140
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 445 a.a.    

>T6CP011626 NC_009832:3321185-3322519 [Serratia proteamaculans 568] [PAAR]
MSELSAARELDEIAHTASEGWMIAGLIGGAIVGAALIAVTGGTAAVAVAAVVAGASAGGGLGEVLGSMSWAPRHVTGVLA
DGSPNVYINGRPAIRAHISTGECSEDGPAKKVVAQGSAKVYINDFPAARINDLLACSAEIHTGSPNVIIGGEKEQTDDIE
PEIPDWVNWTLLAAGAGAAAVLATPAIAILGTLGGLGGGFAGSLIGGAFFGEGSDGQKWSMLAGGFVGGFAGGKGGAKFD
AWRNTKIVEPPPRVTTKVDPISPPRMTLAEAVGQEQAKVWTQTARANAEKNNAQLSTLLTDDQIGAIYGYTTNEGYTALN
PALRGQTPLTPELEAFTGHVTDGLNKLPAYNGETYRGTTLPAHILEQNQIGGTVSDGGFMSTSAKTPFDGDVSISVRGNS
GKQIDFLSKYKNEAEVLYPPNTRFEVINRIEQNGTTHLLYREIP*

  Nucleotide sequence: 1335 bp    

>T6CP011626 NC_009832:3321185-3322519 [Serratia proteamaculans 568] [PAAR]
ATGAGTGAGCTTAGTGCAGCGCGCGAGTTGGATGAAATAGCCCACACTGCGTCCGAAGGCTGGATGATCGCCGGTTTGAT
TGGCGGCGCGATTGTCGGTGCCGCACTAATCGCCGTTACTGGTGGCACGGCGGCGGTCGCTGTCGCAGCCGTAGTTGCAG
GCGCTTCTGCCGGAGGCGGGCTTGGTGAAGTGCTGGGCAGCATGTCCTGGGCACCTCGCCATGTCACCGGGGTACTTGCC
GATGGCTCGCCGAATGTCTACATCAATGGTAGACCTGCCATACGCGCGCATATCTCAACAGGAGAATGCAGTGAAGATGG
CCCGGCCAAAAAGGTCGTTGCTCAAGGCTCAGCCAAAGTCTATATCAATGATTTCCCTGCGGCCCGTATCAATGATTTGC
TGGCATGTAGCGCCGAAATTCACACCGGTTCACCTAACGTCATTATTGGCGGAGAAAAAGAGCAAACGGATGATATTGAA
CCAGAGATCCCCGACTGGGTGAACTGGACGCTGCTTGCGGCGGGTGCCGGTGCCGCTGCCGTGCTCGCCACCCCTGCCAT
AGCGATACTGGGTACGCTGGGCGGATTGGGAGGCGGTTTCGCAGGCAGTTTAATTGGCGGGGCTTTCTTCGGTGAAGGCA
GTGATGGTCAGAAATGGTCAATGCTGGCGGGAGGATTCGTCGGCGGATTTGCCGGTGGCAAAGGCGGTGCCAAGTTTGAT
GCTTGGCGTAATACGAAAATCGTCGAACCTCCACCTCGGGTCACTACAAAAGTAGACCCCATTTCTCCGCCCCGTATGAC
TCTGGCAGAGGCTGTAGGCCAAGAACAAGCGAAGGTGTGGACACAAACGGCAAGGGCCAATGCTGAAAAGAATAACGCTC
AGTTGTCAACCTTGCTCACTGATGACCAAATAGGCGCCATTTACGGTTATACGACTAATGAAGGCTACACAGCATTAAAT
CCAGCATTACGAGGACAAACACCATTGACTCCAGAACTTGAGGCTTTTACTGGACATGTAACTGATGGGCTCAATAAGTT
GCCTGCTTACAACGGGGAGACATATCGCGGAACGACATTACCAGCACATATTTTGGAACAAAATCAGATTGGCGGCACCG
TTTCAGATGGCGGTTTCATGAGTACGTCGGCAAAAACTCCTTTTGACGGTGACGTTAGCATCTCGGTACGAGGAAACTCA
GGTAAACAAATTGACTTTTTGTCAAAGTATAAAAACGAAGCAGAGGTTCTATATCCTCCGAATACTCGGTTTGAAGTTAT
TAATCGCATAGAGCAAAATGGCACAACACATCTTTTATACAGGGAAATTCCATGA